Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3053 ATGATgagcaccaccaccaccaccaccaccaacaacaacaacaacaacgttGGAGAATTTGGGGACACTACTCTGACCAAGGTTTTTGTTGGGGGGCTAGCTTGGGAGACTCCGAAGGATGCCCTTAGAGACCACTTTGAGAAGTACGGTGAGATCCTTGAAGCTGTCATCATTTCCGATAAGCTTACTGGCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAGGAGGCCGAGGCTGCCAAGAAGGCTTGCGAGGACTCAGCAGCTGCCATTATCAATGGTCGCCGAGCAAACTGCAATCTGGCTTTCTTAGGTGCTCGTCGCCCGAGGTCTTCTTCCGCTGCTTCACCACCTCCACAACCACAAGGAGGATCAAACGGGGGAGTACTGAAGAACAATGCATCAAGTACACCACCCACTCACGTGCAGCCATATTATCATCCCGTGGGAACACCTATTTTACCATTCCATCATCACACCCTTCCTTTCTATGGGTACGCGCCTACGTACATTGTGACGGACATAAATTACAATTACAACCAGAAGCAGTGCTATGGCAGCGGTGGGACCTACATGAATGGGCACCACTTGTCCCATGTGTACCCGAGGCAGGCTATTGTGGGTGCCAACACATTGATGCCGATATACCCTCTCTATCAGTATCATCATCCGACGGAGACCATAGGCGTAcctgctcacaacttttatcaAACGGCACCGTGGCATCTTGGGCCCGCACCAACAGGTGTCATGTCCAAGCCCTCGTCCATCATTCCTCACGCAGGTACAGTTGGCACAGGTGACTGCTTTAAAAGGGTTGTCTGA 825 0.4715 MMSTTTTTTTNNNNNNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTGKSKGYGFVTFKEAEAAKKACEDSAAAIINGRRANCNLAFLGARRPRSSSAASPPPQPQGGSNGGVLKNNASSTPPTHVQPYYHPVGTPILPFHHHTLPFYGYAPTYIVTDINYNYNQKQCYGSGGTYMNGHHLSHVYPRQAIVGANTLMPIYPLYQYHHPTETIGVPAHNFYQTAPWHLGPAPTGVMSKPSSIIPHAGTVGTGDCFKRVV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3053 274 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 13 263 - -
Ssu4g3053 274 SUPERFAMILY RNA-binding domain, RBD 22 126 IPR035979 GO:0003676
Ssu4g3053 274 MobiDBLite consensus disorder prediction 117 142 - -
Ssu4g3053 274 CDD RRM_RBM24_RBM38_like 26 102 - -
Ssu4g3053 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 116 IPR000504 GO:0003723
Ssu4g3053 274 PANTHER GEO13361P1-RELATED 13 263 - -
Ssu4g3053 274 MobiDBLite consensus disorder prediction 109 142 - -
Ssu4g3053 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 96 IPR000504 GO:0003723
Ssu4g3053 274 Gene3D - 2 116 IPR012677 -
Ssu4g3053 274 SMART rrm1_1 27 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3053 Ssu-Chr4 77970082 77972943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3053 22 170 C2H2 Transcription Factor Family AT2G19380 29.677 1.57e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3053 - - gmx:100780861 427.943