Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3051 ATGTTGAGACTCTGGGAAGGCATTACTTGTGATGGAGATCTTAGAGTCACACATCTTTTGCTACCATCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAaacctctcttctctctctcaccTTAATCTCTCCCATAATAGATTATCTGGTAGTCTCCAAGACCATTTTTTCTCATTGCTCGATCACTTGCTGGTTCTTGATTTGAGCTACAACCATCTCTCTGGTGAACTGCCACCTCTTGTTGGTGGTGATAACAGTGGCAAAAATAGCAGTGGCGGTGTTATTCAGGAGCTGGATTTGTCTAGTAACTTTTTCAATGGGACACTTCCAAATTCTTTGCTTGAGCACTTGGCAGCTGCAGCAGCTGGAGGGAGTTTGGTGTCTTTGAATGTTAGTAATAACAGCTTCACAGGTCATATTCCCACTTCTCTCTTTTGCATTAGTGAACATAACTCCTCCTCTCTCAGATTCTTGGATTATTCCTCCAATCATTTTGATGGTGCCATTCAGCCTGGACTAGGAGCATGTTCCAAGTTGGAGAAGTTTAGAGCAGGTTTCAATTTGCTGTCAGGGCCTATCCCAAGTGATATTTTTGATGCTGTTTCTCTCACAGAAATCTCATTGCCCCTCAATAAACTCAATGGAACAATTGGTGATGGCATTGTTGGCCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATCATTTCACAGGTTCCATTCCCCATGATATTGGTAAATTCTCCAAGTTGGAACGACTACTCCTTCATGTCAACAATTTGACAGGTACTCTGCCCCCATCTCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAACCTCTTGGAGGGAAATCTCTCTGCATTCAATTTCTCGGGATTCCTCAGACTCACCACACTTGACCTTGGCAACAATGATTTTACTGGGGTTTTACCACCAACCCTTTATGCATGCAAGTCACTTTCAGCTGTGAGGCTAGCATCTAATCACCTTGAGGGAGAGATTTCACCTAAGATACTTGAACTAGAGTCTTTGTCTTTCCTATCAATTTCTACTAACAAGTTGAGGAATGTCACTGGGGCTCTGAGAATACTCAGGGGGCTCAAGAACCTTACTACCCTTATGCTCTCCAAGAATTTCTTCAATGAAATGATACCACAAGATGTGAACATAATAGACCCAGATGGATTCCAAAAACTCCAGGTTTTAGGATTTGGTGGTTGTAATTTCACAGGTCAAATACCAGGTTGGCTTGTGAAACTGAAGAAGCTTGAGGCCTTGGACCTGTCCTTTAATCAAATTAGTGGTCCAATTCCTCCTTGGTTGGGTAGACTTCCTCAGCTTTTCTACATGGACTTGTCTGTTAACCTCCTTACAGGAATATTTCCAATAGAGCTCACAGAACTCCCAGCAATGACATCACAACAGGCAAATGATAAGGTAGAAAGGACTTACTTTGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCCCTACTGCAATATAATCAGCTTTCAGGCCTACCTCCAGCAATATATCTGGGAACCAATCACCTTAATGGCAGTATCCCTATTGAGGTTGGGAAACTGAAAGTCCTTCATCAGCTGGACCTGAAAAGGAACAACTTCTCTGGCAATATACCAGTTCAGATTTCAAACTTGACTAACTTAGAGAAACTAGACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGATTCCCTCAGAAGATTacatttcttgtcttttttcaaTGTAGCATTCAATAATCTTCAAGGACAGATACCAACTGGTGGTCAATTTGATACTTTCTCCTATTCCAGCTTTGAAGGAAACACACAATTGTGTGGTGCAGTTATTCAGCGCTCTTGTCCTTCTCAACAAAATACTGCTAATAGCACCACAGTTAGTCGCAGctcaaacaaaaaagtaatgatTGTACTTATCATTGCAGTCAGTTTTGGCTTTGCTTCCTTGATAGCAGTGTTGACACTGTGGATACTCTCCAAGAGAAGGGTCAATCCAGGAGGAGAGCCTGACAAGATTGAAATGGAATCAATTTCTGCCTACTCCAACAATGGAATTCATCCTGAGGTTGACAAAAGCCTAGTGGTATTGTTTCCcaacaaaaataaggaaacCAAGGACCTTACCATATTTGAGATCCTAAAAGCCACTGAAAATTTCAGTCAGGCCAACATAATAGGATGTGGAGGTTTTGGTTTGGTTTATAAAGCAACATTACCAAATGGAACTACAGTAGCCATCAAGAAACTTTCAGGAGAATTGGGCCTCATGGAAAGGGAATTCAAAGCAGAAGTAGAGGCTTTGTCAACTGCACAACATGGGAATCTGGTGGCATTGCAAGGCTATTGTGTGCATGATGGGTTCCGGCTTCTCATCTACACTTACATGGAAAATGGAAGCCTGGATTACTGGTTGCATGAAAAGCCTGATGGTGCATCTCGACTTGATTGGCCGACTCGCTTGAAGATTGCACAAGGTGCAAGCTGTGGTTTGGCTTATTTGCATCAGATATGCGAACCGCACATCGTGCACCGTGATATAAAATCAAGCAATATACTCCTTGATGAAAAATTTGAGGCACATGTAGCTGATTTTGGGTTGTCCAGATTGATTCTTCCATATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGCTACATACCCCCAGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTACTCACTGGGAGGAGGCCTGTAGATGTATGCAAGCCAAAAATGTCAAGGGAATTGGTTGCCTGGGTTCAACAGATGAGGAGTGAAGGAAAACAAGATCAAGTATTTGACCCTCTTCTGAGAGGGAATGATTTTGAAGGAGAGATGCTGAAGGTTCTGGATGTGGCTTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGGATCAGACAGCCAGCCAACACAGAAATAA 3054 0.4175 MLRLWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGSLQDHFFSLLDHLLVLDLSYNHLSGELPPLVGGDNSGKNSSGGVIQELDLSSNFFNGTLPNSLLEHLAAAAAGGSLVSLNVSNNSFTGHIPTSLFCISEHNSSSLRFLDYSSNHFDGAIQPGLGACSKLEKFRAGFNLLSGPIPSDIFDAVSLTEISLPLNKLNGTIGDGIVGLTNLTVLELYSNHFTGSIPHDIGKFSKLERLLLHVNNLTGTLPPSLMNCVNLVVLNLRVNLLEGNLSAFNFSGFLRLTTLDLGNNDFTGVLPPTLYACKSLSAVRLASNHLEGEISPKILELESLSFLSISTNKLRNVTGALRILRGLKNLTTLMLSKNFFNEMIPQDVNIIDPDGFQKLQVLGFGGCNFTGQIPGWLVKLKKLEALDLSFNQISGPIPPWLGRLPQLFYMDLSVNLLTGIFPIELTELPAMTSQQANDKVERTYFELPVFANANNVSLLQYNQLSGLPPAIYLGTNHLNGSIPIEVGKLKVLHQLDLKRNNFSGNIPVQISNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFNVAFNNLQGQIPTGGQFDTFSYSSFEGNTQLCGAVIQRSCPSQQNTANSTTVSRSSNKKVMIVLIIAVSFGFASLIAVLTLWILSKRRVNPGGEPDKIEMESISAYSNNGIHPEVDKSLVVLFPNKNKETKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGTTVAIKKLSGELGLMEREFKAEVEALSTAQHGNLVALQGYCVHDGFRLLIYTYMENGSLDYWLHEKPDGASRLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMSRELVAWVQQMRSEGKQDQVFDPLLRGNDFEGEMLKVLDVACMCVSHNPFKRPSIREVVEWLKNVGSDSQPTQK 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3051 1017 Gene3D Ribonuclease Inhibitor 200 295 IPR032675 -
Ssu4g3051 1017 Gene3D Ribonuclease Inhibitor 95 199 IPR032675 -
Ssu4g3051 1017 SUPERFAMILY Protein kinase-like (PK-like) 719 1005 IPR011009 -
Ssu4g3051 1017 PRINTS Leucine-rich repeat signature 559 572 - -
Ssu4g3051 1017 PRINTS Leucine-rich repeat signature 40 53 - -
Ssu4g3051 1017 Pfam Protein tyrosine and serine/threonine kinase 737 1003 IPR001245 GO:0004672|GO:0006468
Ssu4g3051 1017 PANTHER LEUCINE RICH REPEAT KINASE 2 5 1009 - -
Ssu4g3051 1017 Gene3D Transferase(Phosphotransferase) domain 1 810 1017 - -
Ssu4g3051 1017 SMART serkin_6 734 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3051 1017 ProSitePatterns Protein kinases ATP-binding region signature. 740 763 IPR017441 GO:0005524
Ssu4g3051 1017 SMART LRR_typ_2 299 323 IPR003591 -
Ssu4g3051 1017 SMART LRR_typ_2 62 86 IPR003591 -
Ssu4g3051 1017 SMART LRR_typ_2 347 369 IPR003591 -
Ssu4g3051 1017 SMART LRR_typ_2 373 397 IPR003591 -
Ssu4g3051 1017 SMART LRR_typ_2 37 61 IPR003591 -
Ssu4g3051 1017 SMART LRR_typ_2 426 450 IPR003591 -
Ssu4g3051 1017 SMART LRR_typ_2 559 583 IPR003591 -
Ssu4g3051 1017 SMART LRR_typ_2 226 250 IPR003591 -
Ssu4g3051 1017 SUPERFAMILY L domain-like 15 147 - -
Ssu4g3051 1017 SUPERFAMILY L domain-like 505 621 - -
Ssu4g3051 1017 Gene3D Phosphorylase Kinase; domain 1 700 809 - -
Ssu4g3051 1017 SUPERFAMILY RNI-like 99 473 - -
Ssu4g3051 1017 Pfam Leucine Rich Repeat 561 582 IPR001611 GO:0005515
Ssu4g3051 1017 ProSiteProfiles Protein kinase domain profile. 734 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3051 1017 Gene3D Ribonuclease Inhibitor 296 638 IPR032675 -
Ssu4g3051 1017 Gene3D Ribonuclease Inhibitor 2 93 IPR032675 -
Ssu4g3051 1017 ProSiteProfiles Leucine-rich repeat profile. 561 583 IPR001611 GO:0005515
Ssu4g3051 1017 PANTHER OS06G0692500 PROTEIN 5 1009 - -
Ssu4g3051 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 856 868 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3051 Ssu-Chr4 77914751 77918743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3051 5 667 Miscellaneous Gene Families AT1G17240 51.574 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu4g3051 PK_Tyr_Ser-Thr 2.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3051 - - gmx:100781943 1774.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3051 4 77914751 77918743 Ssu4g3051 4 77914751 77918743 ECH