Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3043 ATGGAGAACATAGTTTCCATACTAGATTACGTGCCTGTGGGATTCAGATTCCGTCCCACAGATGAAGAGCTTGTGAACTACTACCTCAAACACAAGTCGCTGGGTGATGATTTCCCTGTCCATATCATCCCTGAGATTGACCTTTGCAGCGTGGAACCTTGGGACGTAAAAGCAATGTCGGTGATCAAATCCGATGACCCAGAATGGTATTTCTTCAGTCCTGTTGATTACAAGTATTCAAATAGGAAAAGGGTCAACAGGACAACCAAGCGTGGCTTCTGGAAAGCCACTGGAAATGACCGTAACGTTAGGATGACGGGCACCAACAAAGTCATTGGGACTAAGAAGACTCTTGTTTTCCATGAAGGCCGTGTTCCCCGTGGTGTCAAGACCAACTGGGTTATCCATGAATATCATGCTATTGCCTCTCATGAAAGCCAGGGGACTTTTGTTTTATGTCGCTTGATGAAGAAACCTGGGAAAACAACTGAAGGGGGAATTGAGGCACCAATCTTTGATGAAGGGGAGCCCAGTACACGCATTGTTTCTGACTGTGACAATCAGGCAACAGCAGAAGGAATTCCACCTctagATACTATTACTGGAATAGATATAGAAGCAATCTTTCAGGCAATAGAAGATCCAATTGATGTTGAGCAGGAAGCATTCAATGCCTGTTTTAGAAATGAAAGCATCAATATGCAAACTCCAGTTCAAGCTACTGACGAGGACAATGATTTTGTGAATTCAATTTGGGCTTCTGATGAAGAAGTTGTTATcaatgaagaaagaagagactgttttgtaaatagttcCACCCAACCAAAGTCATTGAGAAGGGTATACAATGGAAGCAGTGACACAGATGCTGAAATTGTCTCTAATCTGCATGACAATATTAGTTCTGGTGAATACCCTGCAACAAAAATGTTTAAATCATCACATGATTCTGTCCGTGGCGGCACAAGTCGTCTAGCTTCTAACTATGAAgcaaacatagagaaaaaggaGAGTATCCTTCAAGATGATTCTTGGGAAGTGGAGACATCCTCTTGTGACTCAATTGCAGATGAACCTTTGGAGATCAATTGTATTGAAATTTCTAGTTCTCCttccactgctacaagattgaaaAATCAGTATCATCTAAGACCGGACAGCTTCATATTACAAAGAACTGTTGCAGGTAGACCTCAAACAGAGAAGAAGGTTTCAAGCATTGCAGTATCCCATGTAGAGGCTCGGAAGGAATTGCTCACCGTTAAATCAGAAAAAGATCAGAAAAATGCTCAAAATACTAGTTCAAGAGAGAACTTAGAAACCAGAAGACATCAATCCTCTGATGTCAATAGAAAAGGTTCCTTCATCTACATGGAGACTTCGAGCCAAAGCGTATATCCGCGCTCGGTGTATCTTGTCAATGTTGTCATGGGGATTTTGTTGTTAATAGTCATTAGTTGGGAAATATTATCATGTTAG 1479 0.3942 MENIVSILDYVPVGFRFRPTDEELVNYYLKHKSLGDDFPVHIIPEIDLCSVEPWDVKAMSVIKSDDPEWYFFSPVDYKYSNRKRVNRTTKRGFWKATGNDRNVRMTGTNKVIGTKKTLVFHEGRVPRGVKTNWVIHEYHAIASHESQGTFVLCRLMKKPGKTTEGGIEAPIFDEGEPSTRIVSDCDNQATAEGIPPLDTITGIDIEAIFQAIEDPIDVEQEAFNACFRNESINMQTPVQATDEDNDFVNSIWASDEEVVINEERRDCFVNSSTQPKSLRRVYNGSSDTDAEIVSNLHDNISSGEYPATKMFKSSHDSVRGGTSRLASNYEANIEKKESILQDDSWEVETSSCDSIADEPLEINCIEISSSPSTATRLKNQYHLRPDSFILQRTVAGRPQTEKKVSSIAVSHVEARKELLTVKSEKDQKNAQNTSSRENLETRRHQSSDVNRKGSFIYMETSSQSVYPRSVYLVNVVMGILLLIVISWEILSC 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3043 492 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 441 - -
Ssu4g3043 492 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Ssu4g3043 492 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Ssu4g3043 492 MobiDBLite consensus disorder prediction 420 447 - -
Ssu4g3043 492 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Ssu4g3043 492 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Ssu4g3043 492 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 8 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3043 Ssu-Chr4 77827553 77830150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3043 8 165 NAC Transcription Factor Family AT4G35580 52.147 6.35e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g3043 NAM 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3043 - - gsj:114390609 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3043 4 77827553 77830150 Ssu4g3043 4 77827553 77830150 ECH