Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3042 ATGGAGATTGTAGGACTCGGTTTCCGTCCAACAGACGAAGAGCTTGTGGACTTCTACCTCAAACACAAGTTGCTCCATGATGATCCCGGTGTCCTCATCATCCCTGAGATTGACCTTTGCGATGTGGAACCTTGGGAAGTACCAGgGAGGTACTTTTACCGGAATTGGAACAACCTTTCAGGAAGTGCATCAGACAGAGAAATACTTCTCCCCAATACAACAGTCTCCAACTGGTATTGA 240 0.4667 MEIVGLGFRPTDEELVDFYLKHKLLHDDPGVLIIPEIDLCDVEPWEVPGRYFYRNWNNLSGSASDREILLPNTTVSNWY 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3042 79 Pfam No apical meristem (NAM) protein 5 51 IPR003441 GO:0003677|GO:0006355
Ssu4g3042 79 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 55 - -
Ssu4g3042 79 ProSiteProfiles NAC domain profile. 2 79 IPR003441 GO:0003677|GO:0006355
Ssu4g3042 79 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 4 55 - -
Ssu4g3042 79 SUPERFAMILY NAC domain 4 55 IPR036093 GO:0003677|GO:0006355
Ssu4g3042 79 Gene3D NAC domain 11 79 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3042 Ssu-Chr4 77821306 77822853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3042 1 49 NAC Transcription Factor Family AT1G33060 54.902 1.87e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g3042 NAM 8.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3042 - - vun:114167597 86.2705