Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3040 ATGCAGAGCACAGTTCCCCCCGTACCGGATCACGTGCCTGTAGGATTCGGATTCCGTCCAACAGACGAAGAGCTTATGGACTATTACCTCAAACACAAGTTGCTGGACGATGATCCCCGTGTCCACGTCATCCCTGTCATTAACCTTTGCGATGTGGAGCCTTGGGACGTACCAGggAGGTACTTTTACCGGAATTGGAACAACCTTTCAGGAAGTGCAACAGACAGAGAAATGCTTCTCCCCAATACAACAGTCTCCAACTGGTATTGA 270 0.4926 MQSTVPPVPDHVPVGFGFRPTDEELMDYYLKHKLLDDDPRVHVIPVINLCDVEPWDVPGRYFYRNWNNLSGSATDREMLLPNTTVSNWY 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3040 89 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 14 65 - -
Ssu4g3040 89 ProSiteProfiles NAC domain profile. 12 89 IPR003441 GO:0003677|GO:0006355
Ssu4g3040 89 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 65 - -
Ssu4g3040 89 Gene3D NAC domain 21 89 IPR036093 GO:0003677|GO:0006355
Ssu4g3040 89 Pfam No apical meristem (NAM) protein 13 61 IPR003441 GO:0003677|GO:0006355
Ssu4g3040 89 SUPERFAMILY NAC domain 10 65 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3040 Ssu-Chr4 77800086 77801698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3040 10 59 NAC Transcription Factor Family AT1G33060 54.000 1.46e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g3040 NAM 4.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3040 - - gsj:114390609 84.7297