Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3039 ATGCAGAGCACAGTTCCCCGTATACTGGATTACGTGCCTGTAGGATTCGGATTCCGTCCTACAGACGAAGAGCTTGTGGACTATTACCTCAGAAAAAAGTTGCTGGATGATAATCCCCGTGTCCACGTCATGCCTGTCATTGACCTTTGCGATGTGGAACCTTGGGAAGTACCAGTGATGTTTGCAGAATCAACGATACGATTCCGTGAACCAGATAAGTTTTTCTTCAGTCCTGTTGATTACAAGTATTCAAATAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGAAAAGACCTTGACATTAGGACCTGGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCTATAAAGGCAGTGTTTCCTGTGGTGTCAAGTCTAACTGGGTTATTCACGAATATCATGCTGCCCCTGCCACCTTTCCTGAAAGCCAGGTTGGTTTGTTTTTTCTAGAGGTTTTAACATTCTTTGGAAATAATCTTTCTACTAGATTTTTTGTCACTACAGCAtgtactttttactttttaggctTTGATGTTATTTCCTATGCTGTTGGTTGTTCTGACTTTAGAATGTTATTGGAACCTTTGTTTGATTGCCACACCATATTCATGACCCAATTCTCTCGACCCTGTCTTGCTTGA 669 0.4081 MQSTVPRILDYVPVGFGFRPTDEELVDYYLRKKLLDDNPRVHVMPVIDLCDVEPWEVPVMFAESTIRFREPDKFFFSPVDYKYSNSKRFNRTTKCGFWKATGKDLDIRTWDTNTVIGTKKTLVFYKGSVSCGVKSNWVIHEYHAAPATFPESQVGLFFLEVLTFFGNNLSTRFFVTTACTFYFLGFDVISYAVGCSDFRMLLEPLFDCHTIFMTQFSRPCLA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3039 222 Pfam No apical meristem (NAM) protein 13 143 IPR003441 GO:0003677|GO:0006355
Ssu4g3039 222 SUPERFAMILY NAC domain 7 146 IPR036093 GO:0003677|GO:0006355
Ssu4g3039 222 ProSiteProfiles NAC domain profile. 12 160 IPR003441 GO:0003677|GO:0006355
Ssu4g3039 222 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 152 - -
Ssu4g3039 222 Gene3D NAC domain 21 155 IPR036093 GO:0003677|GO:0006355
Ssu4g3039 222 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 14 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3039 Ssu-Chr4 77782631 77783409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3039 9 143 NAC Transcription Factor Family AT4G35580 49.630 7.37e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g3039 NAM 4.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3039 - - gmx:100786383 228.409