Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3038 ATGGAGCTGATGCAAGAAGTGAAAGGGTATTCTGATAGCagagaagaggaggaggaagaggaggcAGCAGAAGAAATCATCACAAGAGAAGAAAGCAGCAGGTTGTTACACCAGCACCAGGATGCAGCAGGTTCCAATTTCATCAtcaacaatcatcatcatcaccacacAGCAAAGCAGCTAGACTTCATGGACTTGTCACTGGGGAGCAGCAAGGACGAAGGCAACGATTTGCAAGGATCAGGAAGTGTTTCTGCTTCTGTTTATGCTCATGCAGCTGCTAGTTCTTCTGGCAATGGTAACAACCTGCAGCAGCCGCCTGCTGAGAAGGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTGGGGAAGCTGAACCGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTACTTCCCTCTTGATTCCTCAGCGAATGAGAAGGGGCTGTTGCTCAATTTTGAGGACAGGAACGGCAAGTTGTGGAGGTTCAGGTACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTACATAGACTGGAGGAGAAGGCCtgatcaccatcaccatcatggCCCTGACCCTTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCACACTTAATGTCCATCAGATGGGGTGCCACTGGCAGATTGTACTCCCTCCCCTCCCCTACCCCACCACGCCACCATGACCACTTGCAACAACACCTCAATTACAATTACAACACTAtgtatcatcatcatcaacaacatCCATTTCATCACCATGGTGGTGGAAGTGGAAATGGAACTCATCACTACAACTACCATGACATGAGTACTTCAGGATCTGGCTCAGTCTTTTACCTCAGTTCAACACCCCCATCAATGCCATTGGCTGATCATCAAACCTTGAGCACAAGGCAACACCAAGAGGGAGGCAATGCTTCCCTTTCCCCTATGATCATTGATTCTGTTCCGGTTGCTCATAGCCATCATCATCACTACCATGGTGGCAAGAGTGGTTCTAGTACTAGTACTAGTCCTAGCACTGCAGGCAAAAGACTAAGGTTATTTGGGGTGAACATGGAATGTGCTTCTTCAACATCAGAAGACCCCAAATGCTTCAGCTTATTGTCCTCATCCTCGGTGGCACATGTGACAATGGCTAATTCCAATTCACTTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACACACTTTCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGAACCTTCAATGCTTTTTGATCTGGACCCTTCTTTGCAATACCGGCAGTGA 1410 0.4475 MELMQEVKGYSDSREEEEEEEAAEEIITREESSRLLHQHQDAAGSNFIINNHHHHHTAKQLDFMDLSLGSSKDEGNDLQGSGSVSASVYAHAAASSSGNGNNLQQPPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSTTLFTPFFLPNQPHLMSIRWGATGRLYSLPSPTPPRHHDHLQQHLNYNYNTMYHHHQQHPFHHHGGGSGNGTHHYNYHDMSTSGSGSVFYLSSTPPSMPLADHQTLSTRQHQEGGNASLSPMIIDSVPVAHSHHHHYHGGKSGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPKCFSLLSSSSVAHVTMANSNSLPSSSLPPLQLLREDTLSSSARFGDQRGEPSMLFDLDPSLQYRQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3038 469 SUPERFAMILY DNA-binding pseudobarrel domain 110 215 IPR015300 -
Ssu4g3038 469 ProSiteProfiles B3 DNA-binding domain profile. 114 219 IPR003340 GO:0003677
Ssu4g3038 469 MobiDBLite consensus disorder prediction 361 383 - -
Ssu4g3038 469 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 71 420 - -
Ssu4g3038 469 SMART B3_2 114 219 IPR003340 GO:0003677
Ssu4g3038 469 CDD B3_DNA 112 201 IPR003340 GO:0003677
Ssu4g3038 469 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 71 420 IPR044800 GO:0003700
Ssu4g3038 469 Gene3D - 108 226 IPR015300 -
Ssu4g3038 469 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g3038 469 MobiDBLite consensus disorder prediction 446 469 - -
Ssu4g3038 469 Pfam B3 DNA binding domain 114 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3038 Ssu-Chr4 77729373 77731013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3038 108 399 RAV Transcription Factor Family AT2G46870 50.680 5.65e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu4g3038 B3 2.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3038 - - gmx:100778733 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3038 4 77729373 77731013 Ssu4g3038 4 77729373 77731013 ECH