Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3036 ATGAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTCACACCCCAGGGGTTGGCTGATACACTATGTGGTTCACCCTACTACATGGCTCCAGAGATAATTGACACTCAAAAGTATGATGCCAAGGCTGATTTATGGAGTGTTGGGGCAATATTGTATCAACTAGTGATTGGGAGACCACCATTTGATGGAAATAGTCAATTACAGctttttcaaaatattttggcaTCTACTGAACTGCACTTTCCGCCAGATGCATTAAATGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAACCTTTTACGTCGAAATCCGGATGAGAGATTAACATTCAAGGCATTCTTCAATCACAATTTCCTACAGGAACCCAGGTCAACCGTGAATGTTGAGCAATCAGAAAGATTGACAGTTCATCAATTAGGTGGCTCTGTCTCCGAGAAGATGTCTCAATCACATTCTAAGTATCATTTTGTAGATGATCCAGTGGTAGTCAGTTCAGTTGTCGATGAAACCATGCTGTTGCAAAGAAAGGATGGCAAGATTTCAGCAGGCACTATGAGTGTTAAAGGGTCAACTCCAACTATTGCAAGTGATAAGCTGGGGAAGGCTGTTGATACTGGCCATTTAATGGAGTCCATTGAGAAAGATTATGTCCTTGTCAATTCCCATTTTCCATCATTGGAGGGTTTCTCTGACTACTATGAGGCATCTGTGCCAGATAATTCCTCACGCAGGATTTCTATGTTTCCTCCAAAGAGGACTAACCTGGAGGCTGGAGTTGCAAAACAGACAAAAGATCTGTCCTCTTCCTCCACTGAAggattagaaaatttaaaaagcaatAAACTTGAGGCATGTGTGGCATCCTTTGAATTTGCTGCCATAGGGAAAGAGCATGGAATTTCGTCTCTGCACCCTTCTAACAGGTTGGAGTTGTTGCATCAGTATGTGCAGATCCTTGCCGAACTTTCACAAGAAAAGTATAATACAGGACTGTATCTAGAGTCGCTTGCAGTTGAGTTGGTGGTTTTGGCTATATGGAAAAAGGCTTTTGAAATTTGTGGCTCTTGGCTGGCCTCCATTACTAAGAGTGAGTTGCCTGGAAGCAGTTCGGCTATTGAGTCCATATCTGGCAGTGATGTGGACTTACCACAGACTACAgaacagaaaataaattttagtgatcCTCCTTCTGTCTCCCTGTGGGTCAAACATGAGTTTATTGTTGCAGTTGATCGTGCTGAGAAACTATCATGTCATATTCAAAATATGGATGGGACAGCTGAGATGCCGGATGCAATGGAACTTATATTCCAAAAAGCTCTCTTAATCGGGAAAAGTGGTGCTGAAGATGAATGTATGGAGAACAGAGATAGGGCTGCTGCATCTTACTCAAAAGCGATGCTTCTACTTTCATTTATTGTGGGAGAAGCAGAGAACCTTCCACTGAACCCACCATTTTCACTTACTTCCACCAATAAGGAGCGAATCTTACAATATATTCACTGCTTGCAATCTCGTAAAAAATCTTCATCAGAGTCCTCTTCAAAGAAAGCACATACACTTTTATCAAAGTAA 1578 0.4043 MKIGDFGFARSLTPQGLADTLCGSPYYMAPEIIDTQKYDAKADLWSVGAILYQLVIGRPPFDGNSQLQLFQNILASTELHFPPDALNELHSDCLDLCRNLLRRNPDERLTFKAFFNHNFLQEPRSTVNVEQSERLTVHQLGGSVSEKMSQSHSKYHFVDDPVVVSSVVDETMLLQRKDGKISAGTMSVKGSTPTIASDKLGKAVDTGHLMESIEKDYVLVNSHFPSLEGFSDYYEASVPDNSSRRISMFPPKRTNLEAGVAKQTKDLSSSSTEGLENLKSNKLEACVASFEFAAIGKEHGISSLHPSNRLELLHQYVQILAELSQEKYNTGLYLESLAVELVVLAIWKKAFEICGSWLASITKSELPGSSSAIESISGSDVDLPQTTEQKINFSDPPSVSLWVKHEFIVAVDRAEKLSCHIQNMDGTAEMPDAMELIFQKALLIGKSGAEDECMENRDRAAASYSKAMLLLSFIVGEAENLPLNPPFSLTSTNKERILQYIHCLQSRKKSSSESSSKKAHTLLSK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3036 525 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 302 501 IPR045269 GO:0004674|GO:0006914
Ssu4g3036 525 Gene3D Transferase(Phosphotransferase) domain 1 1 166 - -
Ssu4g3036 525 PANTHER BNAC06G18300D PROTEIN 302 501 - -
Ssu4g3036 525 PANTHER BNAC06G18300D PROTEIN 1 246 - -
Ssu4g3036 525 SMART serkin_6 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3036 525 SUPERFAMILY Protein kinase-like (PK-like) 2 158 IPR011009 -
Ssu4g3036 525 Pfam Protein kinase domain 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3036 525 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 1 246 IPR045269 GO:0004674|GO:0006914
Ssu4g3036 525 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3036 Ssu-Chr4 77621630 77624815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3036 1 122 EF-hand Containing Proteins AT4G23650 37.705 3.02e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Ssu4g3036 Pkinase 3.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3036 - K08269 gmx:100782508 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3036 4 77621630 77624815 Ssu4g3036 4 77621630 77624815 ECH