Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3035 ATGGACGCATACTCCTCTGGCGAAGAAGTGGTTGTTAAGACGAGAAAACCATATACAATCACTAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATAGGTTTTTAGAAGCTTTGAAACTACACGGGCGAGCATGGCAGCGCATAGAAGAGCATATTGGAACAAAGACTGCCGTGCAAATCAGGAGCCATGCACAGAAGTTCTTTACAAAGCTCGAGAAAGAGGCCCTTGTAAAGGGTGTTCCAATTGGACAAGCTCTTGATATAGACATTCCCCCTCCACGGCCCAAAAGAAAACCAAGTAATCCTTATCCTCGGAAGACCAGGATTGGTACCGCAACATTACACAGTGGAGCAAAGGATGGAAAACTCAATTTGGTTGAATCTTCACATGTTAACCAGGCACTGGACTTGGAAAAAGAACCGCTTCCGGagaaacatGATTTAGACGAAGGGCCAACAactgtaaaagaaaataaggatgACAACCGCTCAAAAGTATTTACTGTTCTCCAGGAGGTACCCTGTTCCTCTGTATTTTCAGCAAACAAGAGTTCAATATCAATGTCAGTGCCACTGGGAAATTCATGCGCCTTAAAGGAGATTACACCTTCAGTGAAAGAGGTAATAGCACGAGATGAAAAAACTGAATCTTTTGTCACTATTGAACTTGAAAATGGGATGTTGGAGATCAATGATGGAAAACAGACTAATGGCACTAGTAAAGACTCCACGTTAGAGAATTCTGATGCTTTACAAATGAAATTGGTTCAAAATGAGAAAACAGATGGTCTTGGTTGTGCACTAACAATAGATGGGATGCAAGGCAATCAGAACTACCCCAGACATATTACTGTGCACGTTGTTGACGGGAACCTTGGAACAAGTGCTCAAAATCCATCACAAGATATGTTGTTTCGAGACTTCATGTATCAGCCAATAGGAGGGGTTAACGGCCAACCGAATCTTTTCACCAATTCAGCTGCCTCGAACACAAGTGAAAGTCAAAATAACACAGCACGATCTTCTGTTCATCAATCATTTCTTCCTTATCCTCCCTTCACACAACTCAACCAAGACGATTACCAATCATTTCTTCCCATGTCTTCAATGTTTTCAAATCTTGTTGTCTCTACCTTGCTGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTCGCCGCTACATTTTGGCCCTATGCAAATCCAGAAACTCCAGCAGATTCTCCTAGGTGCTCCCAAGGAAGTTTTACATCTAGACAAATAGGCTCCCCTCCAAGCATTGCAGCCATTGCAGCTGCTACTGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGATTGCTTCCTTTGTGTGCTCCTCTTCATACTGTTTTTGCCTGTCCTCCTGCATCAGTGACTGCAGTTCCATCAATGAATACCGGTGAAGCACCAGCCCTGAAGGCAGAACAAGAAAAGACTACTCTACAAAATCCTCCTCTGCAAGATCAGATGCTGGATCCAGAATGCTCGGAAGCTCAACAAGCTCAGCATTCAGCTTCAAAGTCACCAGCTGTCATTTCATCAGATTCTGAGAGTGGAGATGCCAAGTTAAATACTTCACCAAAGGCTACTGATCATGagacaaacaaaacaaattctGAGCACCTTGATTCCAACAAAACAAAGGGCAGAAAACAGGTTGACCGTTCCTCATGTGGTTCCAACACAGCTTCCAGCAGCGATGTGGAAACTGATGCACTAGAGAAGGAtgagaaaggaaaggaagagcCTGAAACACCTGATGCTAACCATTTAGCCATTGAGTCTAGTAATCGCCGCAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTCTCTGAAGAGGGGAGACTGGCCTTTCAGGCTCTATTCTCCAGAGGGGTGTTGCCTCAAAGCTTTTCACCTCCTCATGCTTTGAAGAATAAGGATCATCAAATGGAGAACACCAAGGATAACACGCAAAACATAGATGACAAAGATGAAGACCTTGACAGCAAGAAATGCAGTTCTAATTATGAAGAAATGCAGAAAAACTCGCCATTTGTAGAAAATAACGATGGACTGCTAACCATAGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGTTCCGTGGAGGCCAAGGAAAGTAGGGTTGGAGCGACCAGCAATCAAGGTGAAGAGAAATGTTGTAAGAGAATACGTTTGGAAGGGGAGACTTTGACTTGA 2253 0.4288 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTRIGTATLHSGAKDGKLNLVESSHVNQALDLEKEPLPEKHDLDEGPTTVKENKDDNRSKVFTVLQEVPCSSVFSANKSSISMSVPLGNSCALKEITPSVKEVIARDEKTESFVTIELENGMLEINDGKQTNGTSKDSTLENSDALQMKLVQNEKTDGLGCALTIDGMQGNQNYPRHITVHVVDGNLGTSAQNPSQDMLFRDFMYQPIGGVNGQPNLFTNSAASNTSESQNNTARSSVHQSFLPYPPFTQLNQDDYQSFLPMSSMFSNLVVSTLLQNPAAHAAASFAATFWPYANPETPADSPRCSQGSFTSRQIGSPPSIAAIAAATVAAATAWWAAHGLLPLCAPLHTVFACPPASVTAVPSMNTGEAPALKAEQEKTTLQNPPLQDQMLDPECSEAQQAQHSASKSPAVISSDSESGDAKLNTSPKATDHETNKTNSEHLDSNKTKGRKQVDRSSCGSNTASSSDVETDALEKDEKGKEEPETPDANHLAIESSNRRRSVSNLTDSWKEVSEEGRLAFQALFSRGVLPQSFSPPHALKNKDHQMENTKDNTQNIDDKDEDLDSKKCSSNYEEMQKNSPFVENNDGLLTIGLGQGKLKTRRTGFKPYKRCSVEAKESRVGATSNQGEEKCCKRIRLEGETLT 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3035 750 MobiDBLite consensus disorder prediction 86 123 - -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 576 595 - -
Ssu4g3035 750 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Ssu4g3035 750 PANTHER SWI/SNF COMPLEX-RELATED 2 732 - -
Ssu4g3035 750 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Ssu4g3035 750 Gene3D - 26 73 - -
Ssu4g3035 750 SMART sant 23 71 IPR001005 -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 483 532 - -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 561 575 - -
Ssu4g3035 750 PANTHER PROTEIN LHY 2 732 - -
Ssu4g3035 750 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 482 610 - -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 136 161 - -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 641 671 - -
Ssu4g3035 750 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Ssu4g3035 750 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 325 344 - -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 533 560 - -
Ssu4g3035 750 CDD SANT 26 69 IPR001005 -
Ssu4g3035 750 MobiDBLite consensus disorder prediction 647 671 - -
Ssu4g3035 750 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3035 Ssu-Chr4 77602655 77620247 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g3035 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3035 K12133 - gmx:100101859 1302.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3035 4 77602655 77620247 Ssu4g3035 4 77602655 77620247 ECH