Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3032 atggaagaagaaaagagcTTCACCTACGCAATGCAGCTGGTGAACTCTAGCGTGCTATCCATGGCCATGCACTCAGCCATAGAGCTtggcatttttgacatcatagGCAAAGCAGGTGTGGGTGCCAAACTATGTGCCAAGGACATTGCGGCTCAGCTTCCTTGCAAGAATCCAGAAGCAGCCACAATGCTGGATCGTATCCTAAGGCTCCTAGCAAGTCACTCCATCATTGATTGCACAGTGGTTGCTGATCAAGAGGGCCCTCCTCCACATTTGCAGCGCCTCTATGGCATGAACTCCGTGGCCAAATACTTTGCTTGCATTGATGGTGCTGGCTCACTAGGCCCTTTGATGGTGCTGACTCAGGACAAGGCCATCCTTCACAATGCAATTCTAGAAGGAGGTATTCCATTCAACAGGGTCCATGGCAAACACGTGTTTGAGTATTCCGACTTGAACTCGAGCTTCAATCAGCTCTTCATGGCAGCAATGACCAACCGTGCGACTTTAATTATGAAGAAGATTCTCGAATCCTACAAGGGGTTTGAGCACATGAAAAGGCTGGTGGACGTTGGCGGTGGCCTAGGGGTCActcttaatataattacatCTAAATACCCTCACATTAAGGGTATCAATTTTGACTTGCCTCATGTTATAGAACATGCCTCTCCCTATCCTGGTGTCGAGCATTTGGGAGGAGATATGTTTGAAAGTGTGCCAAAAGGAGATGCCATTTTGATGAAGTGTGTGCTTCATGATTGGAGTGATGAATGGTGCTTGAAGGTGTTGAAGAACTGCTATGCTGCAATTCCTAATGATGGGAAGGTGATTGTTGTGGAGGGAGTTCTTCCATTTGAACCCAAGACAATAGGTGCAGTGAAGAGCATTTCCCAATTTGATGTTCTGATGATGACTACAAACCCAGGAGGGAAGGAGCGAAGTGAAGAGGAATTCTTGGCATTAGCAAAAGGTACTGGATTCAGTGGCATTAGATACACATGCTTTGTCTGTGACGTCTGGGTTATGGAGTTCTTCAAGACCGAACTGAAAGGAGCCATCTTGGAAGGGGGTATACCATTCAACAGGGTTTATGGCATGCACGCATTTGAGTATCCAGCTGTGGATCCCAGGTTCAATGATGTTTTCAACAAAGCTATGTTCAACATTACTACTATAGTCATGAAGAGCGTTCTTGAGTTCTACGAAGGTTTTAAGAACATTAATAGGCTGGTGGATGTTGGTGGTGGTCTTGGGATCAATCTCAATTTGATCACTTCTAAATATCGTCATGTTCAGGGTCTTAATTTTGACTTGCCTCATGTCATAGGGCATGCTCCTACCTATCCCGGCGTGGAACATGTAGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGACGCCATTTTTATGAAGTGGATACTTCACGATTGGAGTGATGAGCACTGCTTGAAGTTGTTGAAGAATTGCTACAAAGCTATTCCTAGTGATGGAAAAGTGATTGTTGTCGACTCAATGCTTCCCGTTTTGCCCGAGAGTACAGTTATTGCTAAGTCTGGTTTCCAAGCTGACCTCTTGATGATGAGTCAAAACCCAGGAGGGAAAGAGCGAACCCAAAATGAATTCATGGAATTGGCATTAGGTTCTGGATTCAGTGGCATCAGATTCGTCTGCTGTGTCTCTGGTTTCTGGGTTATGGAGTTTTTCAAATAA 1713 0.4396 MEEEKSFTYAMQLVNSSVLSMAMHSAIELGIFDIIGKAGVGAKLCAKDIAAQLPCKNPEAATMLDRILRLLASHSIIDCTVVADQEGPPPHLQRLYGMNSVAKYFACIDGAGSLGPLMVLTQDKAILHNAILEGGIPFNRVHGKHVFEYSDLNSSFNQLFMAAMTNRATLIMKKILESYKGFEHMKRLVDVGGGLGVTLNIITSKYPHIKGINFDLPHVIEHASPYPGVEHLGGDMFESVPKGDAILMKCVLHDWSDEWCLKVLKNCYAAIPNDGKVIVVEGVLPFEPKTIGAVKSISQFDVLMMTTNPGGKERSEEEFLALAKGTGFSGIRYTCFVCDVWVMEFFKTELKGAILEGGIPFNRVYGMHAFEYPAVDPRFNDVFNKAMFNITTIVMKSVLEFYEGFKNINRLVDVGGGLGINLNLITSKYRHVQGLNFDLPHVIGHAPTYPGVEHVGGDMFESVPNGDAIFMKWILHDWSDEHCLKLLKNCYKAIPSDGKVIVVDSMLPVLPESTVIAKSGFQADLLMMSQNPGGKERTQNEFMELALGSGFSGIRFVCCVSGFWVMEFFK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3032 570 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 11 347 IPR016461 GO:0008168
Ssu4g3032 570 PANTHER O-METHYLTRANSFERASE 5 347 IPR016461 GO:0008168
Ssu4g3032 570 PANTHER O-METHYLTRANSFERASE 348 570 IPR016461 GO:0008168
Ssu4g3032 570 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 345 IPR029063 -
Ssu4g3032 570 Pfam O-methyltransferase domain 127 329 IPR001077 GO:0008171
Ssu4g3032 570 Pfam O-methyltransferase domain 349 552 IPR001077 GO:0008171
Ssu4g3032 570 Pfam Dimerisation domain 21 72 IPR012967 GO:0046983
Ssu4g3032 570 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 349 568 IPR029063 -
Ssu4g3032 570 Gene3D - 18 175 IPR036388 -
Ssu4g3032 570 Gene3D Vaccinia Virus protein VP39 157 336 IPR029063 -
Ssu4g3032 570 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 349 570 IPR016461 GO:0008168
Ssu4g3032 570 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 5 347 - -
Ssu4g3032 570 Gene3D Vaccinia Virus protein VP39 348 570 IPR029063 -
Ssu4g3032 570 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 348 570 - -
Ssu4g3032 570 SUPERFAMILY "Winged helix" DNA-binding domain 2 105 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3032 Ssu-Chr4 77470829 77492567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3032 350 570 Monolignol Biosynthesis Gene Families AT5G54160 59.729 9.15e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3032 K13066 - gmx:100788873 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3032 4 77470829 77492567 Ssu4g3032 4 77470829 77492567 ECH