Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3030 ATGCCATTCCTTCAGATGCTTCAGAGTGTGGAATCTCCACAGTTTTTCCCTTTGAAAGAGCCAAATTTTCAAACCCTTCTGAGGCTGCAGCACATGAAGAAACCATGGGAAGGAATAGCCTATATTCCGAGAATGGAAGCACAAGTCCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGCTGGACATGCAGTCACCAGTGAAATCAGAAAGCAATGAGCTCCAACACCCGCTTTCAGTTTCATGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACATAACAAAACAGCACAATCAAGCCCCAAATCTCTGCCAGCAGTTGCAAgggaaaggagaaagagaaagagaacaaGACCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCCGTTGAACGCAACCGGCGACGCCAAATGAATGACCACCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCCTACATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGCTGGAGCAATTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGTGGTGGTTCTTCTTCCAGTAGGGTGTGTaaggcaccaccaccaccatcattatccTTACCACATGGTTATGGAATGAGGTCATCATCCAGTGAAGAAGTGAACTGTGGGGATGAGGTGAAGGCAGAAAACAAGTCAGAGGCAGCAGACATAAAGGTCACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAGGCCAGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGGTATTACTATGTCTTTTCAcctcaattgttttttttttttttttaatgtggtCAACTCTACAAAGTGGAATCAAGTCAGTGTACTATTCTTTTCTGACTTGCAATCTAAGCAAAACCTGCCCCTTCCCTATTTCCAACATTGtctatcattataattataactataaggAGAGTTTCTCTTTggtaaattattactattactattcaTTTAACATTAGAATTTTCCTTGTGCTGGCTGTAGTGCTGTACTACCattacactttttctttttcaatttttggtgatgaataa 1212 0.3861 MPFLQMLQSVESPQFFPLKEPNFQTLLRLQHMKKPWEGIAYIPRMEAQVQAALELESCVTHDMLDMQSPVKSESNELQHPLSVSCVEKVSYECNQEHNKTAQSSPKSLPAVARERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSRVCKAPPPPSLSLPHGYGMRSSSSEEVNCGDEVKAENKSEAADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKVLLCLFTSIVFFFFLMWSTLQSGIKSVYYSFLTCNLSKTCPFPISNIVYHYNYNYKESFSLVNYYYYYSFNIRIFLVLAVVLYYHYTFSFSIFGDE 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3030 403 CDD bHLH_AtFAMA_like 135 208 - -
Ssu4g3030 403 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Ssu4g3030 403 PANTHER MAX DIMERIZATION, MAD 1 308 - -
Ssu4g3030 403 PANTHER TRANSCRIPTION FACTOR BHLH70 1 308 - -
Ssu4g3030 403 Coils Coil 180 200 - -
Ssu4g3030 403 MobiDBLite consensus disorder prediction 195 217 - -
Ssu4g3030 403 Gene3D - 123 200 IPR036638 GO:0046983
Ssu4g3030 403 SMART finulus 138 189 IPR011598 GO:0046983
Ssu4g3030 403 MobiDBLite consensus disorder prediction 96 132 - -
Ssu4g3030 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 199 IPR036638 GO:0046983
Ssu4g3030 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3030 Ssu-Chr4 77428745 77430290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3030 6 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 41.983 9.73e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g3030 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3030 - - gmx:100789928 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3030 4 77428745 77430290 Ssu4g3030 4 77428745 77430290 ECH