Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3028 ATGGCTGAGTTGAACGGAACGATGAAGGAGCAGGAGCAGAAGACGGAGGTGGTTCGGTGGGAGAGGTTTCTGCCTCGGATGGTGCTCAGAGTGCTGCTTGTAGAAGCTGATCATTCTACTCGCCAAATCATCACCGCACTTCTTCGCAAATGCAGTTACAcagTTGTTGCGGTTTCTGACGGATTAAAGGCGTGGGAAACGTTGCAGAGGAAGGCACCTGACCTAGATCTCATATTAACAGAAGTGGAGTTGCCAGCAATATCTGGATTTGCACTTCTTTCTTTAATCATGGAGCATGACATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCAGTTAGCACGGTATTGAAATGCATGTTAAAAGGGGCAGTTGATTTTCTTATAAAACCCATTCGGAGGAATGAGCTTAGGAACTTGTGGCGACATGTATGGAGAAGGCACGCTaTTAGCACTCCAACTCAAAATACaacattttcaccaaaaaaacttaaaactgcCCCAGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCTGTGGCTTCCTCAGAGAAAAATAACGAATGCAGCGAGAGATTGAGTGAGGCTCAAAGCACTTGTACATCTCCAATTTTGGAAGCTGAGAGTACATGCATGGAAAATATGCAGGATGTGCCCCAGCTGAATAGCTCTAAATTGAACAAAATTGATATGGTGAAGCATGAAGAGTTTACCAAATTTGAAAGGGAATCAGCAAAGCATAATGATGAAACAGGAGATAAATCAATTACAATTGTATCAGAGGCTGCACGGTGCGACAAAACTTTTGAATTTACAGATTTAAGGCTAGAACAAGGCCATGGTTTTGCTGAAACTGAAAACGaggatgaaattttaaaatctgaGTTAGGCAGAGATAATCCTAATATTAGTGCTGAGATACATGGATGCAGTGATGAACGGGTAGAAGCTTCTAAAGGAGTTATTGACTTGATTACTACATTTGGGAATCTTCCAAAGCACCCTAATGAAAAGTGTGGTCTCAATGGTGGTCATACAACCAAGTTCAATTGTGATGCACAATTGGAACTTTCTTTAAGAAGTGATTTTCCAGGCAGCTCATGTAAACAAGCAAGTGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGGTATAGTAATAGCAAATTGTCACAGCTGCGTTTCCCAATACCATCGATTACATGTGCTAAAGTAAACAACCCCAATTTGGATTCTCATAAATCCCATAAATTATCTGGAATTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATCAAAACCTGGAGAATATGATCAGTACAGTCATTGGTCAGTATGGACAAGTTAGGCCAAAATTATCAAACAGTCAATGTGGACTCTTACCTGTTTCAGAGGTTATTTCCGATCTTAAGTCCGAGGGACATGGTAATGTTTTCACTTCTGTGTTCTATGCACAATCTGGCATCCATCCCATGTGGAATCCGAAACCAGTCTGCCAGAATGAGAGTTCTCCCTTTCCCACAAGTATCTCCTCCCAATCCAATCCTGAAAGTCACAACTCAGATCAATATCATGACCAGTCCAATGATGCTAGTTACACTGGTCTTAACCAAAATGTAAAGGATAATACCGATTCAGATCACACAAGGCATGATTCTCCTGCTGCTGATCAGAGTGCTGGTGATAGTTTATGCCATGATGCTGCAAATCACGTTAATAGTAGTGCATATGGAAGCATGGACAGTGGAAATGATGGAAATGCTACTTCAGCTGTAGTAGCCAAGAACAATCCGGAAGGTTTCAGTGACAGTGGTTGTCATAATTATGATGAATTTAGAGTGACAGATTGTCATCGCTCCAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAGAGACTGGCAGAGCAGCGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGGTCAATCCAGTCACTGA 2058 0.4072 MAELNGTMKEQEQKTEVVRWERFLPRMVLRVLLVEADHSTRQIITALLRKCSYTVVAVSDGLKAWETLQRKAPDLDLILTEVELPAISGFALLSLIMEHDICKNIPVIMMSSHDSVSTVLKCMLKGAVDFLIKPIRRNELRNLWRHVWRRHAISTPTQNTTFSPKKLKTAPEDNSASNKSSGSVASSEKNNECSERLSEAQSTCTSPILEAESTCMENMQDVPQLNSSKLNKIDMVKHEEFTKFERESAKHNDETGDKSITIVSEAARCDKTFEFTDLRLEQGHGFAETENEDEILKSELGRDNPNISAEIHGCSDERVEASKGVIDLITTFGNLPKHPNEKCGLNGGHTTKFNCDAQLELSLRSDFPGSSCKQASEATEESQRLNHSNTSAFSWYSNSKLSQLRFPIPSITCAKVNNPNLDSHKSHKLSGITSGNCCQYGGSNQNLENMISTVIGQYGQVRPKLSNSQCGLLPVSEVISDLKSEGHGNVFTSVFYAQSGIHPMWNPKPVCQNESSPFPTSISSQSNPESHNSDQYHDQSNDASYTGLNQNVKDNTDSDHTRHDSPAADQSAGDSLCHDAANHVNSSAYGSMDSGNDGNATSAVVAKNNPEGFSDSGCHNYDEFRVTDCHRSSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNGQSSH 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3028 685 Pfam Response regulator receiver domain 31 142 IPR001789 GO:0000160
Ssu4g3028 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 224 IPR045279 GO:0009736
Ssu4g3028 685 MobiDBLite consensus disorder prediction 662 685 - -
Ssu4g3028 685 MobiDBLite consensus disorder prediction 509 554 - -
Ssu4g3028 685 MobiDBLite consensus disorder prediction 507 578 - -
Ssu4g3028 685 SMART REC_2 29 144 IPR001789 GO:0000160
Ssu4g3028 685 Pfam CCT motif 635 677 IPR010402 GO:0005515
Ssu4g3028 685 ProSiteProfiles CCT domain profile. 635 677 IPR010402 GO:0005515
Ssu4g3028 685 MobiDBLite consensus disorder prediction 158 201 - -
Ssu4g3028 685 ProSiteProfiles Response regulatory domain profile. 30 148 IPR001789 GO:0000160
Ssu4g3028 685 Gene3D - 27 257 - -
Ssu4g3028 685 SUPERFAMILY CheY-like 29 156 IPR011006 -
Ssu4g3028 685 PANTHER PRR RESPONSE REGULATOR 216 668 - -
Ssu4g3028 685 CDD psREC_PRR 31 134 - -
Ssu4g3028 685 PANTHER PRR RESPONSE REGULATOR 13 224 - -
Ssu4g3028 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 216 668 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3028 Ssu-Chr4 77370104 77374900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3028 598 683 Response Regulator Gene Family AT5G24470 56.977 4.59e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Ssu4g3028 Response_reg 6.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3028 K12130 - gmx:100791698 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3028 4 77370104 77374900 Ssu4g3028 4 77370104 77374900 ECH
Ssu4g3028 4 77370104 77374900 Ssu4g0066 4 1151217 1155614 ECH