Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3027 ATGAATTCTAAAAGGaggaattttaataaaatgaactcTTCCACcaagagaattttatactatgAAGCTCCTCATAAGTTGTATGTTGGCAATCTTGCCAAGACTGTTAGACCTGAACAGTTGAGAGGTCTCTTTAGCAGATTTGGAAATGTAGTTACTGCAAGAGTATTGCATGATTATAAACAAGGGAAAAGCCGAGTCTATGCCTTTCTCTCCTTTCAATCAGAGGCAGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTGTGGTCGGACACTAATAGTTAAAGAGGGTGTAGGGAGGACTGAGCCTTAG 321 0.3614 MNSKRRNFNKMNSSTKRILYYEAPHKLYVGNLAKTVRPEQLRGLFSRFGNVVTARVLHDYKQGKSRVYAFLSFQSEAERDAAMSLNGTEFCGRTLIVKEGVGRTEP 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3027 106 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 105 - -
Ssu4g3027 106 SUPERFAMILY RNA-binding domain, RBD 24 104 IPR035979 GO:0003676
Ssu4g3027 106 SMART rrm1_1 26 98 IPR000504 GO:0003723
Ssu4g3027 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Ssu4g3027 106 Gene3D - 2 106 IPR012677 -
Ssu4g3027 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 95 IPR000504 GO:0003723
Ssu4g3027 106 PANTHER OS02G0815200 PROTEIN 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3027 Ssu-Chr4 77352639 77353034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3027 27 97 Eukaryotic Initiation Factors Gene Family AT2G23350 36.111 1.23e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3027 - - gmx:100792560 188.734