Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3022 ATGGTGGGTGGTAACAATTCGAGGCAATACAATGATACAACTTCTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATCATAGACAAGAACACTGGGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATTCAGAGGCAGCAGTGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGGAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGCTCACAGGCTCCACAACATGGACGGTTTAGAACAGCACCTGGTATGTTGGCCTCACCTGCTTATCATGGTCCATCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCTAATTCAACTTTTGGATATACTGGGTATTCACAAGACTCTATGTACCCCATGAACTGTTATGGGGTATTTGGAGGTCAACAGTTCTCAACTTACTACCCCTCCAATGGAGCATCTGGGCCAGTGGGATTGGTCCATAACATTTACCCTTTTTCTGCCCAGGATCCATACAATAGCCAGGCTCATGGTTTTGGAGTCCAATATCTCCACATGTTGCAGTTTCCAATTCTCCCTAGGCACTATGGCTCAGCTGGTATCCTTACATTTCCTTCTTCAATGGCAATGCCAACTATTAGTGCAGTTACAACAACAgcaactacaacaacaacagagGCGATAGGAACAAGTGCAGATGCTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCAGCTGAATCTCCACATAGATAA 828 0.4251 MVGGNNSRQYNDTTSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVIIDKNTGKSKGYGFVTFKDSEAAVKACQNPSPIIDGRRANCNIASIGANKNRSQAPQHGRFRTAPGMLASPAYHGPSSTFVHQNSGQYTFPNSTFGYTGYSQDSMYPMNCYGVFGGQQFSTYYPSNGASGPVGLVHNIYPFSAQDPYNSQAHGFGVQYLHMLQFPILPRHYGSAGILTFPSSMAMPTISAVTTTATTTTTEAIGTSADASQTAGTTSEQNSSAESPHR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3022 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Ssu4g3022 275 MobiDBLite consensus disorder prediction 249 275 - -
Ssu4g3022 275 SUPERFAMILY RNA-binding domain, RBD 9 107 IPR035979 GO:0003676
Ssu4g3022 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Ssu4g3022 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Ssu4g3022 275 PANTHER - 1 261 - -
Ssu4g3022 275 Gene3D - 4 109 IPR012677 -
Ssu4g3022 275 PANTHER BOULE-RELATED 1 261 IPR037366 GO:0003729
Ssu4g3022 275 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3022 Ssu-Chr4 77295029 77296738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3022 12 92 C2H2 Transcription Factor Family AT2G19380 41.975 4.54e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3022 - - gmx:100782484 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3022 4 77295029 77296738 Ssu4g3022 4 77295029 77296738 ECH