LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3020	ATGGCTACCCATATTTGTCTCTCTCTGTGGTTCTTCTATGTCACGATAAGCTTTCATCTCGTTTCCACATTGGCTCAGTCTGACAATTACATCATCCACATGGACACATCAGCCATGCCCAAAGCATTCTCCACCCAACACGCTTGGTATCTCTCCACTCTCTCTTCAGCACTGGGCAATTCCAAATCCAATGCTACCACCAATAATCTAAACCCTATCACTTCCAAGCTGATTTACACCTACACCAATGTCATCAATGGTTTCAGTGCAAACTTGTCACCTAGAGAGCTTGAAGCTCTCAAAGCCTCCCTGGGCTACATTTCTTGCATGCGAGATTTACCAGCCAAGCGTGACACAACACACTCGCCGCACTTCCTTGGCCTCAACCCCTACGTAGGGGCGTGGCCGGTCGCTGAATTTGGCAAGGATGTCATTGTTGGGTTGGTCGACACTGGAGTTTGGCCAGAAAGTGAAAGCTTCAAAGATGAGGGAATCACTAAAATTCCTTCACGGTGGAAAGGCCAATGCGAAAACAGCAAACACTTCAAATCATCCCTATGTAACAAGAAACTCATTGGAGCTCGGTTCTTCAACAAAGGGTTGCTGGCAAAGCGCCCCAACATCACCATAGGTTTGAACTCAACACGTGACACTGTTGGTCACGGGACTCACACATCAACCACCGCAGCTGGGGGCGTAGTTGAGGGTGCATCATACTTTGGCTATGCCACTGGATCAGCAACAGGAATAGCTTCACGTGCGAGAGTAGCCATGTACAAGGCACTGTGGGAAGAAGGAGCTTACACATCTGATATAATAGCTGCAATCGATAGTGCAATATCAGACGGGGTTGATGTTCTTTCCCTATCATTTGGCTTTGATGATGTACCTTTGTACGAGGACCCTGTTGCTATAGCCACGTTTGCAGCCATGGAGAAAGGCGTTTTCGTGTCCACGTCAGCAGGGAACGAAGGGCCTATCCTTGGAACACTTCACAACGGAACACCATGGGTCATAACCGTGGCTGCCGGCACTTTGGACCGTGAGTTTCACGGGACTCTTACGCTTGGGAATGGAGTCAGAATAACTGGCATGTCTCTCTATCACGGAAACTTCTCTTCCAGCCATGTTCCTATTGTTTTCATGGGCTTGTGCGGCAAAGTCAAGGAACTGGTCAAGGTGAGGAGCAAGATTGTGGTGTGTGAAGACAAAAACGGAACTATTTTTGATCAAGTGTCTAATGTGGATAAGGCTAATGTTGTCGCAGCAGTGTTCATATCAAACAGCTCTGACAGTTCGTTTTTCTTAGATAATAGGTTTGCATCTGTTATTGTTACCCCAATAAACGGGGAAATCGTCAAAGCTTACATCAAGAGTACTAACTCTGGCTCAAAAGCAAGCATGTCTTTTAAGATGACGGTTTTGGGTACTACCCCAGCACCGAGTGTGGATAGTTACAGTTCCCGAGGGCCTTCAAGTAGTTGTCCATTTGTGTTGAAACCGGACATCACTGCTCCTGGTACTTCAATCTTGGCTGCATGGCCTCAAAATGTTCCGGTGGAAGTGTTTGGGTCCCCAAACGTTTTCAGTGACTTCAACTTGTTAAGTGGCACATCTATGGCATGCCCTCATGTGGCAGGTGTGGCAGCATTGTTAAGAGGAGCACACCCTGATTGGAGCGTTGCAGCCATTAGGTCGGCCATTATGACAACATCGGACATGTTTGACAACACCATGGGACTAATCAAAGACATTGGTGATGATTACAAACCAGCCTCTCCTTTAGCCTCGGGAGCTGGTCATGTCAACCCTAATAGAGCCCTTGACCCTGGACTTGTTTATGATGCGGGAGTTCAAGATTATGTTAATCTCCTCTGCGCACTTGGCTACACCAAAAAGAACATCACCGCCATCACGAGAACCTCTTCCAATGATTGTTCTGAACCCTCTTTGGACCTCAACTACCCTTCTTTTATTGCTTTCTTCAATAGCAACGGTTCAAGGACAGCACAAGAATTTCAGAGAACGGTGACCAATGTTGGGGAGGGACAAACAATCTATGTTGCTAGCGTTACCCCCGTCAAAGGGTACCACGTGAGCGTCGTCCCCAACAAGTTGGTGTTCAAGGAGAAGAACGAGAAGCTAACTTACAAGTTGATGATTGAGGgtccaagaaagaagaaagagaagaatgTGGCTTTTGGGTATCTCACTTGGACCGACGTGAAGCATGTGGTCAGAAGCCCCATTGTGGTCACCACCCTTAGATTGGAATCCTAG	2280	0.468	MATHICLSLWFFYVTISFHLVSTLAQSDNYIIHMDTSAMPKAFSTQHAWYLSTLSSALGNSKSNATTNNLNPITSKLIYTYTNVINGFSANLSPRELEALKASLGYISCMRDLPAKRDTTHSPHFLGLNPYVGAWPVAEFGKDVIVGLVDTGVWPESESFKDEGITKIPSRWKGQCENSKHFKSSLCNKKLIGARFFNKGLLAKRPNITIGLNSTRDTVGHGTHTSTTAAGGVVEGASYFGYATGSATGIASRARVAMYKALWEEGAYTSDIIAAIDSAISDGVDVLSLSFGFDDVPLYEDPVAIATFAAMEKGVFVSTSAGNEGPILGTLHNGTPWVITVAAGTLDREFHGTLTLGNGVRITGMSLYHGNFSSSHVPIVFMGLCGKVKELVKVRSKIVVCEDKNGTIFDQVSNVDKANVVAAVFISNSSDSSFFLDNRFASVIVTPINGEIVKAYIKSTNSGSKASMSFKMTVLGTTPAPSVDSYSSRGPSSSCPFVLKPDITAPGTSILAAWPQNVPVEVFGSPNVFSDFNLLSGTSMACPHVAGVAALLRGAHPDWSVAAIRSAIMTTSDMFDNTMGLIKDIGDDYKPASPLASGAGHVNPNRALDPGLVYDAGVQDYVNLLCALGYTKKNITAITRTSSNDCSEPSLDLNYPSFIAFFNSNGSRTAQEFQRTVTNVGEGQTIYVASVTPVKGYHVSVVPNKLVFKEKNEKLTYKLMIEGPRKKKEKNVAFGYLTWTDVKHVVRSPIVVTTLRLES	759

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3020	759	ProSitePatterns	Serine proteases, subtilase family, serine active site.	537	547	IPR023828	-
	Ssu4g3020	759	Gene3D	Peptidase S8/S53 domain	143	621	IPR036852	GO:0004252\|GO:0006508
	Ssu4g3020	759	PANTHER	PUTATIVE-RELATED	19	756	-	-
	Ssu4g3020	759	Pfam	Subtilase family	141	577	IPR000209	GO:0006508\|GO:0008236
	Ssu4g3020	759	CDD	Peptidases_S8_3	118	573	IPR034197	-
	Ssu4g3020	759	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	17	116	IPR037045	-
	Ssu4g3020	759	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	19	756	IPR045051	-
	Ssu4g3020	759	SUPERFAMILY	Subtilisin-like	118	612	IPR036852	GO:0004252\|GO:0006508
	Ssu4g3020	759	Pfam	Fibronectin type-III domain	652	752	IPR041469	-
	Ssu4g3020	759	Pfam	Peptidase inhibitor I9	30	114	IPR010259	-
	Ssu4g3020	759	Gene3D	-	347	475	-	-
	Ssu4g3020	759	PRINTS	Subtilisin serine protease family (S8) signature	141	160	IPR015500	-
	Ssu4g3020	759	PRINTS	Subtilisin serine protease family (S8) signature	217	230	IPR015500	-
	Ssu4g3020	759	PRINTS	Subtilisin serine protease family (S8) signature	536	552	IPR015500	-
	Ssu4g3020	759	Gene3D	-	625	755	-	-
	Ssu4g3020	759	ProSiteProfiles	Serine proteases, subtilase domain profile.	122	608	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g3020	Ssu-Chr4	77243685	77245964	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g3020	14	759	Subtilisin-like Serine Gene Family	AT5G67090	45.550	0.0	632

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3020	-		-	gmx:100783026	1221.45