Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3013 ATGCCGGAAAACATGAGCATATCTGTGAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTTCATCCAACTGAAGAGGAGCTCCTTCAGTACTACTTGAGGAAGAAGGTCTCTTACGAGAAGATTGACCTCGATGTGATTCGTGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAAGAGAAATGCAAGATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACGCGCACCAATCGCGCCACTGCTGCGGGATTCTGGAAGGCCACTGGCCGTGACAAAGTTATATACAGCAACGGCAAGAGGATTGGAATGAGGAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCGACACCAATATTGTGTCCAATGTGATGGGAGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGGCAGCCCCTCAGCATCTGGGGAAGGTAGAAGGAGCCACTTGTTTGACTCGTGTGACGAGGGAGCTTTGGAGCAGATACTTCAGCAAATGGGAAGGGGTTGCAAGGAAGAGAGTAGCTACGAAGGCAACTACAACTATGGAAGGTTTGCGAGGCCTTTTGAGACCAATGGCGGGTACAATGACAGGTTCATGAAGCTGCCAAGCCTAGAGAGCCCAAAATCCACTAGCATGGAGAGCCagcataacaataataataataataatggcgATAACAATGagcacaacaataataatgggTACCATCCCATTATTCCAGTAGAGATGGGCACGGACAATGAAGGGTCATTCACAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCACCCATTGGAGGCATCATCATCGTTGGTGGTAGGATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGTTGGACCGATTGGTTGCCTCTCAGCTGAATGGCCAAACCGAGGCCTCTAGGCAATTGGCATGCTTCAATGACCCCACCATGGGGTATTGCACTAGCGACCATGATCTGCAATTGCCCACCCTCCGATCCTCATCATCCGCTTCATCAACGTCAACACACCCAAGACCTTCCGCTGCACCCGCGTACATCAATACCACACAGGATTACGCCAGCGAGATTGACCTGTGGAACTTTACTCGATCCACGTCCTCCTTGTTGTCCTCCTCTGAACCACTGTGCCACGTGTCCAACACGTCAGTGTAG 1305 0.4889 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSDTNIVSNVMGDAAQEEGWVVCRIFKKKNHLKTLGSPSASGEGRRSHLFDSCDEGALEQILQQMGRGCKEESSYEGNYNYGRFARPFETNGGYNDRFMKLPSLESPKSTSMESQHNNNNNNNGDNNEHNNNNGYHPIIPVEMGTDNEGSFTTHQVSGGDPNMVHPLEASSSLVVGSGGGGLTNWAALDRLVASQLNGQTEASRQLACFNDPTMGYCTSDHDLQLPTLRSSSSASSTSTHPRPSAAPAYINTTQDYASEIDLWNFTRSTSSLLSSSEPLCHVSNTSV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3013 434 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 386 - -
Ssu4g3013 434 MobiDBLite consensus disorder prediction 244 283 - -
Ssu4g3013 434 MobiDBLite consensus disorder prediction 374 395 - -
Ssu4g3013 434 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Ssu4g3013 434 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Ssu4g3013 434 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Ssu4g3013 434 MobiDBLite consensus disorder prediction 251 281 - -
Ssu4g3013 434 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Ssu4g3013 434 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3013 Ssu-Chr4 77002370 77004327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3013 1 433 NAC Transcription Factor Family AT2G46770 53.898 1.07e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g3013 NAM 4.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3013 - - gmx:100793308 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3013 4 77002370 77004327 Ssu4g3013 4 77002370 77004327 ECH