Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3009 ATGTCTCAACAAAGGCAGTCTCAGATGGTGGGTGGTAACAACCCGGACCAATATAATGACACAACATTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCTGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGTAGGAGGGCAAACTGCAATCTTGCATCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTCAGCATGGTGCAGGACGGTTCAGGCCTCCACCTGGACTAGTGGCATCACCTGCTTATCATGGTTCTTCATCTACATTTTTCCATCAACCCCCTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCACAAGACACCTTGTATCCTACGAGCTATTATAATGTCTATGGAGTTCAGCAGTTTTCAGCTTACTACCCATCTGCTGGAGCTTCTGGGGCAGTAGGTTTGATCCATAATATCTACCCTTTTTATGGTCAATATGCACAGAGTATTCAGGGTCATGGTTTTGGGGTTCAATACCCCCAAATGGCACAGTTTCCACCTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTGGCAGTGCCAACCACTAGTGCAGGTGTAACAGCAATTGCAACCACAACTACAACTACAGCATCAACAGGTGTGGCAGCAACTGTGtttGTAGAAGTAGGGGAAGATCATATTCATTCATGTATTCAGCATTGGataggATTAGTCCAAAAGAAAACATAA 870 0.4414 MSQQRQSQMVGGNNPDQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGAGRFRPPPGLVASPAYHGSSSTFFHQPPRQYTFPYSAYGYSQDTLYPTSYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPFYGQYAQSIQGHGFGVQYPQMAQFPPLPQHYGSTGILSYPSSVAVPTTSAGVTAIATTTTTTASTGVAATVFVEVGEDHIHSCIQHWIGLVQKKT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3009 289 SMART rrm1_1 25 97 IPR000504 GO:0003723
Ssu4g3009 289 PANTHER BOULE-RELATED 1 267 IPR037366 GO:0003729
Ssu4g3009 289 SUPERFAMILY RNA-binding domain, RBD 12 122 IPR035979 GO:0003676
Ssu4g3009 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Ssu4g3009 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Ssu4g3009 289 Gene3D - 1 116 IPR012677 -
Ssu4g3009 289 PANTHER - 1 267 - -
Ssu4g3009 289 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3009 Ssu-Chr4 76886880 76889009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3009 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 5.08e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3009 - - gmx:100786208 473.396