Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3008 ATGGGGAAGAAGGGAAGTGGTAGTTCATGGTTAACCGCTGTGAAAAGGGCATTCAGATCTCCCACCAAAGACGGTGACAAAAGGAGTGGCAGAAGAAGAGAGGAGTGTGATCAAGAAGAAGACGAAGAGAAGAAGAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCATCATGAAGGAGTGAACAACAACAGCACTCAGCCAAAGTTGAACCATGATGTGGCAGCAAGTGGGGGTTCAAGGGCAGACCAAGATCAGAAGCATGCACTTGCGGTGGCGGTGGCCACCGCAGAAGCCGCCATGGCCACCGCTCAGGCGGCGGTGGAGGTGGCAAGGTTGACCAAACCTGCTAGCCATGCCAGGGAGCATTATGCTGCTGTTCTGATTCAAACTGCTTTCAGAGGGTACCTGgCAAGAAGAGCACTTCGTGCACTTAAGGGGTTGGTGAAGTTGCAAGCTCTAGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAAATGACCCTTAGGTGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCACTTGAAGGTAGTAGAAAATCCACTTTCAGTGACACCGCTAGTGTTTGGGACTCGCGATATCTTCAGGACATTTCAGACAGGAAATCAATTTCAAGAGAGGGAAGCAGCATTGCAGATGACTGGGATGAACGTCCTCACACAGTTGAAGAAGTGAAGGCCATGTTGCAGCAGAGGAAGGAAGCTGCAATGAAGAGGGACAAGAACTTATCCCAAGCCTTTTCCCAACAGATTTGGAGGAATGGCAGGACATCATCAATTGGAAATGAAGATGAACTGGAAGAGAGGCCAAAATGGCTAGACCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGACCCCATTAAGACTGTGGAGATTGACACCTCTCAGCCTTATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCACACCATCATCAACCACAAAGGCATTCCATTGCTTCCCCAATCCATAGATCTCACCAAAATGGATCCCTTCACCAGTCCCCTGCCACCCCTTCTCCTGCCAAATCAAGGCCCATCCAAGTCCGGTCGGCGAGCCCGCGTTGCGTTAGAGAAGACAGAAGCTACCACACCTCCCAGACACCAAGCTTGAGGTCTAATTACCACTACACAGGAAACTTGTACCAAAATGGAAGGATTGGAACTAGCAGTGGTGTTGGTGCTACATTGCCTAATTACATGGCAGCAACCGAGTCTGCAAAGGCCCGAATTCGGTCACAAAGCGCACCGAGGCAGAGGCCATCCACACCAGAGAGGGACAGGGCTGGATCAGCAAAGAAAAGGCTTTCTTTCCCAGCTCCTGATCCTTATAGTGTGGGAGTGAGTTATGGAAATTATGGGCATAGTTTGAGGAGTCCCAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCAGCAATCCAACTACTCTTCTTGCTGCACTGAGAGTGGTGGTGCTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGAAGGTGGTTGAGATGA 1614 0.4913 MGKKGSGSSWLTAVKRAFRSPTKDGDKRSGRRREECDQEEDEEKKREKRRWIFRKTHMSHHEGVNNNSTQPKLNHDVAASGGSRADQDQKHALAVAVATAEAAMATAQAAVEVARLTKPASHAREHYAAVLIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLEGSRKSTFSDTASVWDSRYLQDISDRKSISREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKNLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPHHHQPQRHSIASPIHRSHQNGSLHQSPATPSPAKSRPIQVRSASPRCVREDRSYHTSQTPSLRSNYHYTGNLYQNGRIGTSSGVGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRAGSAKKRLSFPAPDPYSVGVSYGNYGHSLRSPSFKSVSGSHFGLEQQSNYSSCCTESGGAEVSPSSTGDLRRWLR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3008 537 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Ssu4g3008 537 MobiDBLite consensus disorder prediction 19 49 - -
Ssu4g3008 537 MobiDBLite consensus disorder prediction 510 526 - -
Ssu4g3008 537 Pfam Protein of unknown function (DUF4005) 387 487 IPR025064 -
Ssu4g3008 537 MobiDBLite consensus disorder prediction 440 475 - -
Ssu4g3008 537 Gene3D - 122 190 - -
Ssu4g3008 537 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Ssu4g3008 537 SMART iq_5 124 146 IPR000048 GO:0005515
Ssu4g3008 537 SMART iq_5 147 168 IPR000048 GO:0005515
Ssu4g3008 537 MobiDBLite consensus disorder prediction 301 409 - -
Ssu4g3008 537 MobiDBLite consensus disorder prediction 510 537 - -
Ssu4g3008 537 Pfam IQ calmodulin-binding motif 128 146 IPR000048 GO:0005515
Ssu4g3008 537 Pfam IQ calmodulin-binding motif 152 168 IPR000048 GO:0005515
Ssu4g3008 537 PANTHER IQ-DOMAIN 5-RELATED 6 537 - -
Ssu4g3008 537 MobiDBLite consensus disorder prediction 301 316 - -
Ssu4g3008 537 MobiDBLite consensus disorder prediction 317 381 - -
Ssu4g3008 537 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 6 537 - -
Ssu4g3008 537 MobiDBLite consensus disorder prediction 1 86 - -
Ssu4g3008 537 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3008 Ssu-Chr4 76876583 76878868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3008 1 537 IQD Protein Family AT1G01110 58.423 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3008 - - gmx:100786729 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3008 4 76876583 76878868 Ssu4g3008 4 76876583 76878868 ECH