Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3005 ATGAGCGGGAAGCCAGCGAGACCTCGTACCCGTGTGGGAAAGTACGAGCTGGGAAAAACCATCGGCGAGGGAAGCTTCGCTAAGGTCAAGTTCGCTACGAACGTTGAGAATGGTAACTATGTAGCCATCAAAATCCTCGACCGTAACCACGTTCTCCGTCACAAGATGATGGAACAGCTGAAGAAAGAAATTGCAGCGATGAAGATGATCAATCATCCAAACGTTGTCAAAATTTACGAGGTGATGGCAAGCAAAACAAAGATTTACATTGTCCTAGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATAGCTAAAAGTGGGAGACTTAAAGAGGATGAAGCAAGAAGTTATTTCCAACAACTAATCAATGCAGTTGATTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCAGAGAATCTTCTTCTGGACTCAAATGGTATTCTAAAAGTTTCAGATTTTGGATTGAGTACGTACGCACATCAGGAGGATGAGCTTCTCCGCACTGCTTGTGGAACTCCAAATTATGTTGCTCCGGAGGTGCTTAATGATAGAGGTTATTTTGGTTCTACATCTGATATCTGGTCTTGTGGAGTCATTCTCTTTGTGCTTATGGCTGGGTACTTGCCCTTTGATGAGCCAAATCATATGGCACTGTACAAAAAAATTGGCAGGGCTCAATTTACATGTCCATCATGGTTTTCCCCTGAGGCAAAGAAACTATTGAAGCGTATTCTTGATCCAAACCCTTTAACAAGGATAAAAATTCCTGAACTCTTAGAAGATGAATGGTTCAAAAAAGGATACAAACCAGCATCTTTTACAGAGGAAGAGGCTGTCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAATCTTGTGacagagagaaaagagaaaccCGAGTCAATGAATGCTTTTGAGCTCATATCTAGGTCACAAAGCTTCAATCttgaaaatttgtttgagaagCAGACACAGGGGCAGGGGATTGTTAAGAGAGAAACACATTTTACGTCACAGCACCCTGCGAATGAAATTATGTCAAAAATTGAGGAAGCTGCCAAGCCTCTGGGATTTAATGTTCACAAGCGAAATTATAAGATGAAGCTGCAAGGTGATAAGAGCGGAAGGAAGGGTCACCTTTCAGTGGCTACAGAGGTTTTTGAGGTGGCTCCCTCCTTGCACATGGTGGAGCTCCGAAAGACCGGGGGTGACACACTAGAGTTTCACAAGGCATGTGAACATTATTTTAGTTGTGACTTTGGTTTTGggaaacaagaagagaaatctcTTCATTTTGCTCCTCTTCCTTTTctgttaattattttctttggtaGAACCTATGTTTCTAGTTCTTTTACAAGCGATGGCTTCAACCTTTTTTATAAAGTCTGTTCCACTTCCTATGTATTTTACGGAGGGAACAATGACATCATCTCAAATTGTCAATGTCTCAGTTTGTTGATGATTGACGCTAACCTTATTTGTTGA 1512 0.3942 MSGKPARPRTRVGKYELGKTIGEGSFAKVKFATNVENGNYVAIKILDRNHVLRHKMMEQLKKEIAAMKMINHPNVVKIYEVMASKTKIYIVLELVNGGELFDKIAKSGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNGILKVSDFGLSTYAHQEDELLRTACGTPNYVAPEVLNDRGYFGSTSDIWSCGVILFVLMAGYLPFDEPNHMALYKKIGRAQFTCPSWFSPEAKKLLKRILDPNPLTRIKIPELLEDEWFKKGYKPASFTEEEAVNVDDVAAAFNDSKENLVTERKEKPESMNAFELISRSQSFNLENLFEKQTQGQGIVKRETHFTSQHPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKACEHYFSCDFGFGKQEEKSLHFAPLPFLLIIFFGRTYVSSSFTSDGFNLFYKVCSTSYVFYGGNNDIISNCQCLSLLMIDANLIC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3005 503 Gene3D Transferase(Phosphotransferase) domain 1 95 296 - -
Ssu4g3005 503 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Ssu4g3005 503 PANTHER - 9 419 - -
Ssu4g3005 503 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Ssu4g3005 503 SUPERFAMILY Protein kinase-like (PK-like) 12 297 IPR011009 -
Ssu4g3005 503 Pfam NAF domain 307 370 IPR004041 GO:0007165
Ssu4g3005 503 Gene3D Kinase associated domain 1, KA1 304 428 - -
Ssu4g3005 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Ssu4g3005 503 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3005 503 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 9 419 - -
Ssu4g3005 503 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3005 503 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Ssu4g3005 503 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3005 503 CDD CIPK_C 311 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3005 Ssu-Chr4 76796408 76802805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3005 1 424 CBL-interacting serine-threonine protein kinases AT1G01140 74.246 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu4g3005 Pkinase 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3005 - - gmx:100794136 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3005 4 76796408 76802805 Ssu4g3005 4 76796408 76802805 ECH