Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3000 ATGGAAGAACTAATCATCTCCCCTTCTTCATCCTCCTCTTTGGTCTCTCTAACCCAAGAAAACCCAACACTGACCCCAACCCTTCAGCAAAAACTTCAATTCCTTCTCCAGAGCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCCTCAAACGACGAAAATGGCAACCTCTTCTTATCCTTCGGAGAAGGCCATTTCCAAGGCACCAAAGAAACTTCCCCAAAATTACTAACCGCCCCCCACCCTAACCCCATGAAGAAGTTCGCGAGAAGCCCCTCAAACGACAACATCAACGACGCGGAGTGGTTCTACGTCATGTCGTTGACTCGCACCTTCCCAGTCGCCaatgcttcttcttcttcgctCCCCGGCAAGTCCTTCGCGCTGGGCTCCGTGCTCTGGCTGAACAGCAAGCACGAGCTCCAGTTCCACAACTGCGAGAGGTCCAACGAGGCCCACGTGCACGGGATCGAAACGCTAATCTGCGTCCCCACGCAAAACGGCGTCGTCGAAATGGGCTCCTACGACTCCATCAAACAAAACTGGTCCCTCGTCCACCACGTCAAGTCCCTCTTCGAATCAACAAACCCGCTTCCCCTCAACAACAACAGCATCCTCAACGACCACCCCATCTCCTTCGCCGACATCGGCGTCGTCGCCGGAATCCAAGAaaccaaaaagagaaaacaaaccCAAACACCGCCCAACAAAAACGACAACTACGTGGACTCCGAGCACTCCGACTCGGATTGTCCAACGTTACCAACCACCACCGAAGTACCAAAGAAAAGAGGGCGAAAACCGGTCCTGGGGCGCGAGACCCCGATGAACCACGTGGAGGCAGAGAGACAGAGGAGGGAAAAGCTGAACCATCGTTTTTACGCTTTGAGAGCGGTAGTTCCGAACGTTTCGCGCATGGACAAGGCTTCCTTGTTGTCCGACGCTGTCGCTTACATCAACGAGCTCAAAGCCAAGATTGAGTACTTGGAGTCGCAGCAGCACAGAGAGAGTAACAAGAAAGTGAAGGTGGAAATGGCAGATACCACGGACAACCAGAGCACTGCAACAACTTCCATCGTTGTAGACCAAACCGGGTCCGGGCCTGGGCCTCACGGGTTTGGGCTTGAGGTGAAGCTTGTGGGGCCCGATGCCATGGTGAGGGTTCAATCGGAGAATGTGAACCACCCCGGGGCGAGGCTAATGGGTGCATTGAGGGACTTAGAGTTTCAGGTCTACCACGCGAGCATGTCGTGTGTTAATGATCTCATGCTTCAGGATGTGGTCGTTAAGGTTCCGAAAGGCATGACGAGCGAAGAGGGTCTTAAATCTGCGATTCTCATGAGGTTGGATCAGTAA 1362 0.5228 MEELIISPSSSSSLVSLTQENPTLTPTLQQKLQFLLQSQPDWWVYAIFWQASNDENGNLFLSFGEGHFQGTKETSPKLLTAPHPNPMKKFARSPSNDNINDAEWFYVMSLTRTFPVANASSSSLPGKSFALGSVLWLNSKHELQFHNCERSNEAHVHGIETLICVPTQNGVVEMGSYDSIKQNWSLVHHVKSLFESTNPLPLNNNSILNDHPISFADIGVVAGIQETKKRKQTQTPPNKNDNYVDSEHSDSDCPTLPTTTEVPKKRGRKPVLGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQHRESNKKVKVEMADTTDNQSTATTSIVVDQTGSGPGPHGFGLEVKLVGPDAMVRVQSENVNHPGARLMGALRDLEFQVYHASMSCVNDLMLQDVVVKVPKGMTSEEGLKSAILMRLDQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3000 453 MobiDBLite consensus disorder prediction 227 242 - -
Ssu4g3000 453 CDD bHLH_AtAIB_like 273 337 - -
Ssu4g3000 453 Gene3D - 273 341 IPR036638 GO:0046983
Ssu4g3000 453 SMART finulus 281 330 IPR011598 GO:0046983
Ssu4g3000 453 Coils Coil 321 341 - -
Ssu4g3000 453 MobiDBLite consensus disorder prediction 227 272 - -
Ssu4g3000 453 PANTHER MYC 1 451 IPR045084 GO:0003700|GO:0006355
Ssu4g3000 453 Pfam Helix-loop-helix DNA-binding domain 279 324 IPR011598 GO:0046983
Ssu4g3000 453 PANTHER TRANSCRIPTION FACTOR BHLH14 1 451 - -
Ssu4g3000 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 337 IPR036638 GO:0046983
Ssu4g3000 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Ssu4g3000 453 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 194 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3000 Ssu-Chr4 76691418 76692779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3000 28 451 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.156 3.12e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g3000 bHLH-MYC_N 5e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3000 - K13422 gmx:100804965 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3000 4 76691418 76692779 Ssu4g3000 4 76691418 76692779 ECH