Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2999 ATGGGCCAGTGCTACGGCAAGACCCATCTCAAGCCGGAAAATGACGCCGCCGCCGCCGAGGTTGCCGGATCAGGCGACGTCCCGCCCTCTCCGTTGCCGGCGAGGGAGACGCCGGCCCGGTCGAGCCCCTGGCCGAGTCCCTACCCCCACGGCGGCGGCGGGGTGACGCCGTCGCCGGCGAGGGGGACGCCGAGGAGGTTTTTCCGGCGGCCGTTTCCGCCCCCGTCGCCGGCGAAGCACATAAGGGCGTCGCTGGCGAAGCGGCTGGGGCACGCAAAGGCGCCGAAGGAGGGGCCGATCCCGGAGGAGGAGGCGGCGGTGGCGGCGGCGGAGCAGGCGCTGGATAAGAGCTTTGGGTATAGTAAGAATTTTGGGGCGAAATATGAAATCGGGAAAGAAGTGGGGcgagggcattttggtcatacTTGCTATGCCAAGGGCAAGAAGGGTGAGCTCAAAGACCAACCTGTTGCAGTTAAAATCATTTCCAAGGCCAAGATGACCACTGCAATAGCAATTGAAGATGTTCGCAGAGAGGTGAAGATATTAAAAGCTCTATCTGGCCATAAACATCTCGTCAAATTTCATGATGCTTTTGAGGATGCCAACAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATTCGGAGGAGAATGCCAAGGTTATAGTTTTGCAGATCCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGCGACTTGAAACCTGAGAATTTTCTCTTCACTTCAAGAAGTGAAGATGCTGACATGAAGCTCattgattttggtctttctgACTTCATCCGACCAGATGGACGGCTGAATGACATTGTTGGGAGTGCATATTACGTTGCACCTGAGGTCCTTCACAGGTCATATAGTTTGGAAGCGGATATATGGAGTATTGGTGTTATTACCTATATCTTATTATGCGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTTAGAGCTGATCCTAACTTTGATGATATACCTTGGCCTTCTGCCTCTGCAGAGGCCAAGGACTTCGTAAAACGGCTCCTAAACAAGGACTACAGGAAAAGAATGACAGCTGTCCAAGCTCTAACTCATCCTTGGTTGAGGGATGACAGCCGTCCAATCCCTttagatatattagtttataaacTAGTGAAGTCTTATCTTCTTGCAACACCATTCAAACGTGCAGCAGTGAAGGCCCTTTCAAAAGCCTTGCCAGAGGATGAATTGCCCTACCTTAGGGTACAATtcagattgttggaaccaaatgAAGACGGGCACATCTCccttgaaaatttcaaaatgGCTCTTGTACGCAATGCAACTGACGCCATGAGGGAGTCGAGGGTTCTTGATATCATAAATGCGATGGAGCCACTTGCCTATAGAAAGATGGACTTTGAAGAATTTTGTGCAGCTGCAATTAGCACATATCAATTGGAGGCACTTGATAGGTGGGAAGATATTGCCTCAACTGCTTTTGAACATTTTGAGAGAGAGGGCAACCGTCCGATATCGGTTGAAGAATTAGCCAgaGAGTTGAGTCTTGGGCCTTCAGCTTATTCAATTCTCAAAGACTGGATACGAAATACTGATGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCTCCGTAGTTCGAACCCAAGACACCACAGGTAG 1746 0.4725 MGQCYGKTHLKPENDAAAAEVAGSGDVPPSPLPARETPARSSPWPSPYPHGGGGVTPSPARGTPRRFFRRPFPPPSPAKHIRASLAKRLGHAKAPKEGPIPEEEAAVAAAEQALDKSFGYSKNFGAKYEIGKEVGRGHFGHTCYAKGKKGELKDQPVAVKIISKAKMTTAIAIEDVRREVKILKALSGHKHLVKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYSEENAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDGRLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDIPWPSASAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRPIPLDILVYKLVKSYLLATPFKRAAVKALSKALPEDELPYLRVQFRLLEPNEDGHISLENFKMALVRNATDAMRESRVLDIINAMEPLAYRKMDFEEFCAAAISTYQLEALDRWEDIASTAFEHFEREGNRPISVEELARELSLGPSAYSILKDWIRNTDGKLSLLGYTKFLHGVTLRSSNPRHHR 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2999 581 SUPERFAMILY EF-hand 416 569 IPR011992 -
Ssu4g2999 581 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Ssu4g2999 581 ProSitePatterns Protein kinases ATP-binding region signature. 134 160 IPR017441 GO:0005524
Ssu4g2999 581 Pfam Protein kinase domain 128 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2999 581 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 574 - -
Ssu4g2999 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Ssu4g2999 581 Gene3D - 414 560 - -
Ssu4g2999 581 SMART serkin_6 128 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2999 581 Gene3D Phosphorylase Kinase; domain 1 124 214 - -
Ssu4g2999 581 SUPERFAMILY Protein kinase-like (PK-like) 123 410 IPR011009 -
Ssu4g2999 581 Gene3D Transferase(Phosphotransferase) domain 1 215 404 - -
Ssu4g2999 581 CDD STKc_CAMK 127 389 - -
Ssu4g2999 581 ProSiteProfiles Protein kinase domain profile. 128 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2999 581 MobiDBLite consensus disorder prediction 31 45 - -
Ssu4g2999 581 PANTHER CDPK-RELATED KINASE 3 44 574 - -
Ssu4g2999 581 Gene3D - 411 498 - -
Ssu4g2999 581 MobiDBLite consensus disorder prediction 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2999 Ssu-Chr4 76648754 76656232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2999 30 574 EF-hand Containing Proteins AT3G50530 62.522 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu4g2999 Pkinase 3.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2999 - - gmx:100796256 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2999 4 76648754 76656232 Ssu4g2999 4 76648754 76656232 ECH