Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2995 ATGGAATATACTTATTCAGCAGAAGCTGCAGAGGCAGAAACTTACACAAGTAGCAGCCCCAACCCATTAACTGCcatgagaaagaagaaaaacaacaacaacaacacaagaAGGTTCAGTGATGAACAAATCAAATCACTGGAAACTATGTTTGAGACAGAGTCAAGGCTTGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTAGAGAGAGACTTTAGCATACTCCAAACCAATTACAACAGTTTGGCTTCACGTTTTGAAGCTCTAAAGAAGGAAAAGCAAACATTGCTAATTCAGATGCAGAAGCTGAATCATCTAATACAGAAGCCATTGGAGCCAAGCCAGAGATGCACACAAGTTGAAGCAGCAAACAGCACGGACAGTGAATCAGAAAATGGAGGCAGCATGAAATGTGAACCTGAGGTAAAGCCAAGCCCATCAATGGAAAGATCAGAACATATACTTGGTGTTCTCTCAGATGATGACACCAGCATAAAGGTGGAAGACTTTGGCCTAGAAGATGAAGCTGGACTTCTGAATTTTGTTGAACATGCTGATGGTTCCTTGACTTCACTAGAAGATTGGGGTGCTTTTGAATCCAATGATCTCTTGGGACAATCAAGCAGTGATTACCAATGGTGGGACTTCTGGTCTTGA 729 0.4074 MEYTYSAEAAEAETYTSSSPNPLTAMRKKKNNNNNTRRFSDEQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDFSILQTNYNSLASRFEALKKEKQTLLIQMQKLNHLIQKPLEPSQRCTQVEAANSTDSESENGGSMKCEPEVKPSPSMERSEHILGVLSDDDTSIKVEDFGLEDEAGLLNFVEHADGSLTSLEDWGAFESNDLLGQSSSDYQWWDFWS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2995 242 Pfam Homeobox associated leucine zipper 90 131 IPR003106 GO:0006355|GO:0043565
Ssu4g2995 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 242 IPR045224 GO:0003700
Ssu4g2995 242 MobiDBLite consensus disorder prediction 139 174 - -
Ssu4g2995 242 Pfam Homeodomain 37 88 IPR001356 GO:0003677
Ssu4g2995 242 Coils Coil 110 130 - -
Ssu4g2995 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 12 242 - -
Ssu4g2995 242 MobiDBLite consensus disorder prediction 139 157 - -
Ssu4g2995 242 CDD homeodomain 37 91 IPR001356 GO:0003677
Ssu4g2995 242 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Ssu4g2995 242 MobiDBLite consensus disorder prediction 10 30 - -
Ssu4g2995 242 Gene3D - 16 95 - -
Ssu4g2995 242 SUPERFAMILY Homeodomain-like 17 92 IPR009057 -
Ssu4g2995 242 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Ssu4g2995 242 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Ssu4g2995 242 MobiDBLite consensus disorder prediction 1 39 - -
Ssu4g2995 242 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Ssu4g2995 242 SMART HOX_1 33 94 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2995 Ssu-Chr4 76533172 76534184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2995 5 242 Homeobox Transcription Factor Family AT2G46680 51.362 4.12e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu4g2995 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2995 K09338 - gmx:100811208 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2995 4 76533172 76534184 Ssu4g2995 4 76533172 76534184 ECH