Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2989 ATGACCCGTTACAACTCCATATTCCTCGTTATCCTCAGTGTCGTCGTTGTTTTCGTGATTCGGTGGTTGCTGTTCAAAACGGGATTGATACACGCTTTCAAAAAACTCTTCAGAAGGGTCCAAGATTGGTGCCACGTGTACCAGTTCCTCAGAGTCCCCGAATTCAACGAAAGCATGCAGCGGAATCAGCTTTACCGCAAAGTTTCCCTCTATTTGCATTCCCTTCCCTCCATCGAAGACGCCGACTTCACTAACCTCATTTCCGGTAGTGGTAACAACCAAAACGACATCGTTTTGCGCCTCGACCCGAACCAAACCATCGAGGACCCTTTCCTCGGGGCCACACTCTTCTGGTTCAACCAAAAAACCGAACCGAACCGGATTTCCTCCTTCGTTCTCAAAATCAGAAAAACCGATAAACGCCGAATCCTCCGCCCGTACCTCCGCCACATCAACGCCGTCGCCGACGAGTTGGAGCACCAAGGGAAGCGCCATTTGCGGCTGTTCATGAACGCCGCCGTCTCCGACGGCGGCGGCGGAACACGGTGGAGATCCGTTCCATTCACTCATCCGGCGACGTTCGAGACCATGGCGATGGAGAAGGATCTCAAGAACAAAATCAGATCGGATCTCGAATCCTTCCTCAGGGCGAAGCAGTATTACCGGAAACTCGGCCGCGCGTGGAGACGGAGCTTCCTCCTGTACGGTCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCCGCGATGGCGAACTTCCTCCGCTACGACGTGTACGACGTGGATGTCTCGAAAGTTCGCGGCGATTCGGATCTGAAGTTCCTCCTAATGGAAACGACGGCAAAGTCGATCGTCGTGGTGGAGGATCTGGACCGGTTCCTGGAACCGGAATCGGAGTCGGCGGTGACGGCGTCGGGGATCCAGAACTTCATGGACGGGATTCTGAGCGCGTGCTGCGGCGAGGAGAGGGTGATGGTGTTCACGATGAACAGCAAGGAGTGCGTGGACCCGAACCTGCTGCGTCCGGGTCGGGTCGACGTGCACATCCACTTTCCGGTGTGCGATTTCTCGGCGTTCAAGACGCTGGCGAGTAGCTACCTCGGCGTGAGGGAGCACAAGCTGTTCGCGCAGGTGGAGGAGATTTTCCGGCACGGCGTCAGCCTCAGCCCCGCGGAGATCGGCGAGTTGATGATCGCGAATCGGAACTCGCCGAGTCGGGCCATCAAGTCGGTGATCGGGGCGCTGAAATCGGACGGTGATGGGAGAGGGTTGGGTGACGTGATCGGACGGCAGATAGGGGGTGATGACGTGGACAAAGCGACCGAAGGGGCGCTTTGTAGTGGGGACGGGTTTTCTACGGTTAAGGATTTGCGGAAGTTTTATGGTTTCTTCAAATTGCGGAACGCCAGAAGAACTTCTCAACAGTCCAACTCCTTGGCCCATGACAGATGA 1449 0.5618 MTRYNSIFLVILSVVVVFVIRWLLFKTGLIHAFKKLFRRVQDWCHVYQFLRVPEFNESMQRNQLYRKVSLYLHSLPSIEDADFTNLISGSGNNQNDIVLRLDPNQTIEDPFLGATLFWFNQKTEPNRISSFVLKIRKTDKRRILRPYLRHINAVADELEHQGKRHLRLFMNAAVSDGGGGTRWRSVPFTHPATFETMAMEKDLKNKIRSDLESFLRAKQYYRKLGRAWRRSFLLYGPSGTGKSSFVAAMANFLRYDVYDVDVSKVRGDSDLKFLLMETTAKSIVVVEDLDRFLEPESESAVTASGIQNFMDGILSACCGEERVMVFTMNSKECVDPNLLRPGRVDVHIHFPVCDFSAFKTLASSYLGVREHKLFAQVEEIFRHGVSLSPAEIGELMIANRNSPSRAIKSVIGALKSDGDGRGLGDVIGRQIGGDDVDKATEGALCSGDGFSTVKDLRKFYGFFKLRNARRTSQQSNSLAHDR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2989 482 Gene3D - 184 352 IPR027417 -
Ssu4g2989 482 SMART AAA_5 228 354 IPR003593 -
Ssu4g2989 482 CDD AAA 216 351 - -
Ssu4g2989 482 PANTHER BNAC04G00800D PROTEIN 7 439 - -
Ssu4g2989 482 Pfam Domain associated at C-terminal with AAA 28 119 IPR025753 -
Ssu4g2989 482 PANTHER BCS1 AAA-TYPE ATPASE 7 439 - -
Ssu4g2989 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 409 IPR027417 -
Ssu4g2989 482 Pfam ATPase family associated with various cellular activities (AAA) 233 351 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2989 Ssu-Chr4 76314428 76315876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2989 224 352 Calmodulin-binding Proteins AT3G56690 27.465 2.28e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2989 - K08900 gmx:100792584 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2989 4 76314428 76315876 Ssu4g2989 4 76314428 76315876 ECH
Ssu4g2989 4 76314428 76315876 Ssu4g0099 4 1667781 1669205 ECH
Ssu4g0099 4 1667781 1669205 Ssu4g2989 4 76314428 76315876 PCT