Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2985 ATGATGGTTCTAGATGTGGTCTCGTCTGGTCCTACCGCAACAGCCATTTCTCAAACTGTGGATGTCATTGCTGAGTTCCTAGTTAATGCTAAAGATGTCCTTGTGAAGAAGGATAGTTTTCAGGAACTTGCTGCTTACATGGAACGAATTAAGCCTATCTTAGAAGAATTGAGGAGAGGAAAAGTCAGTGATTCTGAGACATTCAATCAAGCCATTGAGATCatgaataaagaaattaaagatgCAAAGCAACTGGCTCTAGAATGCAGCAAGAAGAGCAAGGTTTATCTACTAATGAGCTGCAGGTCCATTGTTAAGAGCTTAGAAAATCACACAAAACAGTTGAGCAGGGCACTTAGTCTTCTTCCTTTAGCCACAATAGGTCTTTCTTCAGGAATAATTGAAGAAATTGAAAAGCTACGTGACAATATGCAGACAGCTGGATTTAAGGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTGATCGTTCCTACGCCAATAATTTGCTAATGCTCATTGCTGAGGCTGTTGGGATTAGGAATGAGAGGTCAACAATAAAGATGGAACTTGAAGAGTTTAAGAGTGAGATTGAAAATGCACGCGTTAGGAAGGACTTAGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCTAAGGACAAGGAACAAAAGTACTTTGCCAAACGCCAATCGTTGGGTAGTCAAATCTTGGAGCCTTTGCAGTCATTTTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCAGGGCAGACATTTGAGAGAAGTGCCATAGAGAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCCATGACCTTGATTCCTTTAGACACATCAATTTTGAGAcctaacaaaaaattgaaacaatccATACAAGAGTGGAAGGATAGAAATATAATGATTACAATTGCTACgttgaaagaaaaaatccaGTCTGGAAATGATGAAGAAGTGCTGCATGATCTGCAAACTCTTCAGAAtttgtgtgaagaaaaagacCAACACAGGGAATGGATTATACTGGAGAATTACATACCAACTCTCATCCAAATTCTATCCAGGAACCGTGATATAAGGAAATGTTCTCTTGTCATCCTTGGCATGCTGGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTTCAACTGTTGACCATGCAATTGAATCGATTGTCCGGTCTCTTGGACGTCGTCCAGAGGAAAGGAAGTTAGCAGTGGCATTACTGCTTGAATTATCCAAATATGATTTGGCCCGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTCTTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACGGAGCTCTTGGAGAATCTTTCATACGCCGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTAAAGATGACTATGGCCACTAATTTAGCAGAAATGGAGTTAACTGACCACAATAGGGAGTCCTTGTTTGATGGTGGTGTACTGGTTCCTCTTCTTCACATGTTTTCACATAATGATCTTCATGTGAAAACAGTTGCTATTAAAGCTCTTAGGAATTTATCCAGCTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGGGCTGCACAACCACTACTTAACCTCCTTTTCAATCAAAGCATACAAACCGCAAGTTTGTGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAGCTATCTCTCAGGATGCTCAAACACCTGTTTTATTACTAGATTCTGATGATGATGTTTTTCATCTCTTCAATTTAGTTAGTGTCAGTGTCACACAGCCTGTTGTGCAACAAAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCAGCATCATATATCAGAACCAAACTAAAAGAGTGCTCAGCTGTTCCAAAATTGATTCAACTGTGTGAGAATGAAAACCCAAACCTACGGGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAAGCCATTATACAGGAGAATGTGGATCAGAAGTGCATTAATAATTTACTCCGGATCATAAaatcttcatctgatgaagaggAGATACTTTCTGCTATGGGAATAATATGCTATCTTCCAGAAATTGACCAGATAACTCAATGGCTTCTGGATGCTGGTGCACTGCCAATCATTAAAAGTTATGTCCAAGATGGGAAAGACAGAGATCATCAAAAGAGTGACTTAGTAGAGAATGCCATTGGTGCCCTATGTCGTTTCACAGTTCCAACAAACTTGGAATGGCAAAAAAGTGTAGCTGAAACTGGGATCATAACTGTTTTAGTGCAGTTGCTTGAGAATGGAACCCCCTTGACAAAACAACGTGTGGCACAGTCTCTTGCTCAGTTTTCCAAAAGTTCATTTAGGCTGAGCAGGCCGATACCGAAGCGCAAAGGACTATGGTGCTTCTCAGCTCCTGCTGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCATCATTTTGCCTTTTGGAGGCTAATGCAGTGGGACCACTCACAAAGACTCTTGGGGAATCTGATCCTGGCGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATAGAAGGTGAAAGACTGCAGAGTGGTAGTAAAGTGCTTTCAGAAGCAAATGCCATACCACTAATAATAAGATATCTTGGTTCCCCCTCACCAGGGTTGCAGGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGCTAGTCGAGTTCAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGCGGGGTAATGGTAATATTAGATCCATGTCAGCTAGAATATTGGCACATTTGAACGTGCTTCATGATCAGTCTTCATATTTCTGA 3018 0.3963 MMVLDVVSSGPTATAISQTVDVIAEFLVNAKDVLVKKDSFQELAAYMERIKPILEELRRGKVSDSETFNQAIEIMNKEIKDAKQLALECSKKSKVYLLMSCRSIVKSLENHTKQLSRALSLLPLATIGLSSGIIEEIEKLRDNMQTAGFKAALAEEEILEKIESGIRENNVDRSYANNLLMLIAEAVGIRNERSTIKMELEEFKSEIENARVRKDLAEAMQMDQIIALLERADAASSPKDKEQKYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPMTLIPLDTSILRPNKKLKQSIQEWKDRNIMITIATLKEKIQSGNDEEVLHDLQTLQNLCEEKDQHREWIILENYIPTLIQILSRNRDIRKCSLVILGMLAKDNEEAKERISTVDHAIESIVRSLGRRPEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSYADQNVIQMAKANYFKHLLQRLSTGPDDVKMTMATNLAEMELTDHNRESLFDGGVLVPLLHMFSHNDLHVKTVAIKALRNLSSSKKNGQEMIRQGAAQPLLNLLFNQSIQTASLWEDVAAIIMQLAASAISQDAQTPVLLLDSDDDVFHLFNLVSVSVTQPVVQQNIIQTFYALCQTPSASYIRTKLKECSAVPKLIQLCENENPNLRASAVKLFSCLVESCDEAIIQENVDQKCINNLLRIIKSSSDEEEILSAMGIICYLPEIDQITQWLLDAGALPIIKSYVQDGKDRDHQKSDLVENAIGALCRFTVPTNLEWQKSVAETGIITVLVQLLENGTPLTKQRVAQSLAQFSKSSFRLSRPIPKRKGLWCFSAPADIGCMVHGGICSVKSSFCLLEANAVGPLTKTLGESDPGVCEASLDALLTLIEGERLQSGSKVLSEANAIPLIIRYLGSPSPGLQEKSLHALERIFRLVEFKQMYGASAQMPLVDLTQRGNGNIRSMSARILAHLNVLHDQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2985 1005 Coils Coil 65 85 - -
Ssu4g2985 1005 Gene3D - 871 1003 IPR011989 -
Ssu4g2985 1005 Gene3D - 336 634 IPR011989 -
Ssu4g2985 1005 CDD RING-Ubox_PUB 263 303 IPR045210 -
Ssu4g2985 1005 Pfam Armadillo-like 436 601 IPR006911 -
Ssu4g2985 1005 Gene3D - 635 845 IPR011989 -
Ssu4g2985 1005 Coils Coil 193 220 - -
Ssu4g2985 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Ssu4g2985 1005 SMART arm_5 363 402 IPR000225 GO:0005515
Ssu4g2985 1005 SMART arm_5 569 605 IPR000225 GO:0005515
Ssu4g2985 1005 SMART arm_5 873 913 IPR000225 GO:0005515
Ssu4g2985 1005 SMART arm_5 750 796 IPR000225 GO:0005515
Ssu4g2985 1005 SMART arm_5 528 568 IPR000225 GO:0005515
Ssu4g2985 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Ssu4g2985 1005 SMART arm_5 445 486 IPR000225 GO:0005515
Ssu4g2985 1005 SMART arm_5 665 705 IPR000225 GO:0005515
Ssu4g2985 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 335 IPR013083 -
Ssu4g2985 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Ssu4g2985 1005 SUPERFAMILY RING/U-box 249 329 - -
Ssu4g2985 1005 Pfam U-box domain 263 328 IPR003613 GO:0004842|GO:0016567
Ssu4g2985 1005 Gene3D - 13 127 IPR036537 GO:0007166
Ssu4g2985 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1005 - -
Ssu4g2985 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1005 - -
Ssu4g2985 1005 SUPERFAMILY ARM repeat 333 1002 IPR016024 -
Ssu4g2985 1005 Coils Coil 137 157 - -
Ssu4g2985 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2985 Ssu-Chr4 76192604 76197897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2985 250 1005 U-box Gene Family AT1G76390 28.253 8.76e-61 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2985 - - gmx:100799969 1748.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2985 4 76192604 76197897 Ssu4g2985 4 76192604 76197897 ECH