Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2983 ATGAAGGTTCCAATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCCGTTGAACAGTGCTTGAAAGAGTATGGTGTAAAACTGGACAAGGGTCTGAGTACCTATGAGGTTCAGAAGCGGCGCGAGAAGTATGGTTGGAATGAGCTTGCAAAGGAGAAAGGGAAGCCCTTGTGGGAACTAGTATTGGAGCAATTTGATGACATGCTGGTGAAGATACTTTTGATGGCAGCCTTCATATCATTTCTTCTGGCTTACTTTCACGGAAGTGACTCAGGTGAATCTGGATTTGAGGCTTATGTGGAGCCACTTGTGAtcgttttgattttagtcctcaatGCCATTGTTGGGGTTTGGCAAGAGAGCAATGCTGGGAAGGCTCTTGAAGCTCTCAAAGAGTTGCAATGTGAGTCTGGAAAAGTGTTAAGGGATGGCCATTTTGTGCCTGATTTGCCTGCAAGAGAGCTTGTTCCTGGTGATATTGTGGAATTGCATGTTGGAGATAAAGTCCCTGCTGACATGAGAGTTGCAGCTTTGAAAACCTCAACATTGAGGGTTGAGCAAAGTTCTTTAACTGGAGAAGCAATGCCAGTTCTCAAGGGGACCAATCCTGTTTTCTTGGATGATTGTGAGTTGCAGGCTAAAGAAAACATGGTGTTTGCAGGCACCACTGTTGTCAATGGGAGTTGTGTTTGTATTGTTATCACCACAGGAATGGATACTGAAATTGGGAAGATACAGATGCAAATACATGAGGCTTCTCAGGAGGAGAGTGATACCCCTTTGAAGAAGAAGCTGGATGAGTTTGGTGGCAGACTTACCACTGCAATTGGGCTAGTTTGTCTCATTGTTTGGGTTATCAACTACAAGAATTTCATTTCTTGGGATGTTGTGGACGGATGGCCCTCAAACATCCAATTTTCATTCCAAAAGTGTACCTACTATTTCAAAATTGCTGTTGCTCTTGCTGTTGCTGCAATCCCCGAAGGACTCCCTGCTGTAATCACAACCTGTTTAGCACTCGGTACGCGGAAAATGGCTcaaaagaatgcaattgtgAGAAAGCTCCCAAGTGTGGAAACTTTGGGATGTACTACTGTGATATGTTCAGACAAAACTGGTACTTTGACAACAAATCAGATGGCTGTGACAGAGTTCTTTACTTTGGGAGGGAAAACCACTGCTTCTAGACTCATTAGTGTTGAAGGAACAACTTATGATCCCAAGGATGGGGGAATTGTTGATTGGGGGTGCTATAACATGGATGCTAATTTGCAAGTCATGGCTGAAATATGTGCCGTTTGTAATGACGCCGGGATTTACTTCGATGGTCGCCTTTTTAGAGCCACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTGGAAAAGATGGGAGTTCCAGAGGTGAAGTCAAGGAACAAAATTCGTGATAATGCACCACTTGCTGCAAACAACATGATGGATGGCAACGCTGTGGTGAAGTTAGGCTGTTGTGAGTGGTGGAATAAAAGATCCAAAAGGGTAGCTACGTTGGAGTTTGATCGCATTCGGAAGTCGATGAGTGTTATTGTTCGTGAACCAAATGGTCAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGTTTACTGGAGCGTAGTTCACATGTGCAACTTGCTGATGGATCCCTGGTTCCAATAGATGATCAATGCAGGGAACTACTTCTTCAAAGACTCCAGGAGATGAGTTCAAAGGGATTGCGTTGCTTGGGTTTCGCATATAACGATGACTTAGGAGAATTTTCAGACTATTATGCTGACACTCATCCTGCTCACAAGAAATTGCTTGATCCAACATACTACTCATCCATTGAAAGTGATCTAGTTTTTGTTGGCATTGTTGGCTTAAGGGACCCTCCTCGCGAGGAAGTTCACAAAGCAATTGAGGATTGTAGGGAAGCTGGCATTAGAGTTATGGTAATAACTGGAGATAATAAGTCAACAGCAGAGGCTATTTGTAGGGAAATCAAATTGTTCTCCAAAGATGAGGATCTCACAGGGCAAAGTTTGACAGGTAAGGAATTCATATCTCTTTCTCATTCAGAACAAGTTAAAATATTGTTGAGGCCTGGAGGCAAGGTTTTCTCTCGAGCGGAACCTAGACACAAGCAAGAAATTGTTAGACTACTGAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAACGATGCACCTGCACTTAAGCTTGCCGACATAGGGATTGCTATGGGCATAACTGGGACAGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATAGTTTCAGCTGTTGCTGAGGGTCGctctatttataataacatgAAGTCATTCATCagGTACATGATATCATCCAATGTTGGGGAAGTAATATCCATATTCTTGACTGCTGCTTTGGGGATCCCAGAATGCATGATACCAGTGCAACTTCTGTGGGTGAATTTGGTCACTGATGGTCCACCTGCTACAGCTCTTGGTTTTAATCCTGCTGATGTTGATATCATGCAGAAGCCGCCTCGCAGAAGTGATGATGCTCTAATAAGTTCTTGGGTTCTTTTCCGTTATCTGGTAATTGGTTCCTATGTGGGACTTGCAACAGTTAGCATTTTTGTCTTGTGGTACACTCGAGCATCTTTTCTTGGCATCAATCTTGTGAGTGATGGTCACACAATCATAGAATTGTCCCAGCTTCGCAACTGGGGGGAGTGTCCCTCATGGTCTAATTTTACTGTTGCTCCATTTGAGGTTGGAGGGGGTCGCTTGATCACATTTTCAAATCCTTGTGACTATTTCACAGTTGGCAAAGTAAAGGCcatgactctctctctctcggtCTTGGTGGCAATTGAGATGTTCAACTCTTTGAATGCCCTCTCAGAAGAGAATAGCTTGAGGAAGGTACCACCTTGGAGGAACCCTTGGCTTTTGGTAGCCATGTCAATATCATTAGGACTCCATTGCCTCATACTCTACACCCCATTCCTTGCAGAAATGTTTGGTGTTGTTCCACTTAGTTTGAATGAGTGGTTTATGGTCCTTTTAATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTTGTGGTGAGGACTCAAAGAACGCTGTTGACTAAGGAGAAAGAAGCATGA 3174 0.4253 MKVPMEEKPFPAWSWSVEQCLKEYGVKLDKGLSTYEVQKRREKYGWNELAKEKGKPLWELVLEQFDDMLVKILLMAAFISFLLAYFHGSDSGESGFEAYVEPLVIVLILVLNAIVGVWQESNAGKALEALKELQCESGKVLRDGHFVPDLPARELVPGDIVELHVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTNPVFLDDCELQAKENMVFAGTTVVNGSCVCIVITTGMDTEIGKIQMQIHEASQEESDTPLKKKLDEFGGRLTTAIGLVCLIVWVINYKNFISWDVVDGWPSNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTEFFTLGGKTTASRLISVEGTTYDPKDGGIVDWGCYNMDANLQVMAEICAVCNDAGIYFDGRLFRATGLPTEAALKVLVEKMGVPEVKSRNKIRDNAPLAANNMMDGNAVVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPNGQNRLLVKGAVESLLERSSHVQLADGSLVPIDDQCRELLLQRLQEMSSKGLRCLGFAYNDDLGEFSDYYADTHPAHKKLLDPTYYSSIESDLVFVGIVGLRDPPREEVHKAIEDCREAGIRVMVITGDNKSTAEAICREIKLFSKDEDLTGQSLTGKEFISLSHSEQVKILLRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKSFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRRSDDALISSWVLFRYLVIGSYVGLATVSIFVLWYTRASFLGINLVSDGHTIIELSQLRNWGECPSWSNFTVAPFEVGGGRLITFSNPCDYFTVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRKVPPWRNPWLLVAMSISLGLHCLILYTPFLAEMFGVVPLSLNEWFMVLLISAPVILIDEILKFVVRTQRTLLTKEKEA 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2983 1057 Pfam E1-E2 ATPase 134 348 - -
Ssu4g2983 1057 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Ssu4g2983 1057 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Ssu4g2983 1057 PRINTS P-type cation-transporting ATPase superfamily signature 756 768 - -
Ssu4g2983 1057 PRINTS P-type cation-transporting ATPase superfamily signature 646 656 - -
Ssu4g2983 1057 PRINTS P-type cation-transporting ATPase superfamily signature 368 382 - -
Ssu4g2983 1057 PRINTS P-type cation-transporting ATPase superfamily signature 732 751 - -
Ssu4g2983 1057 SMART Cation_ATPase_N_a_2 11 85 IPR004014 -
Ssu4g2983 1057 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1051 - -
Ssu4g2983 1057 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 628 IPR023299 GO:0000166
Ssu4g2983 1057 Pfam Cation transporter/ATPase, N-terminus 13 80 IPR004014 -
Ssu4g2983 1057 Gene3D - 30 252 - -
Ssu4g2983 1057 PRINTS Sodium/potassium-transporting ATPase signature 985 1009 - -
Ssu4g2983 1057 PRINTS Sodium/potassium-transporting ATPase signature 361 382 - -
Ssu4g2983 1057 SUPERFAMILY HAD-like 366 836 IPR036412 -
Ssu4g2983 1057 SUPERFAMILY Calcium ATPase, transduction domain A 140 246 IPR008250 -
Ssu4g2983 1057 ProSitePatterns E1-E2 ATPases phosphorylation site. 370 376 IPR018303 -
Ssu4g2983 1057 SFLD p-type atpase 349 784 IPR044492 -
Ssu4g2983 1057 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 705 817 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g2983 1057 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 305 393 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g2983 1057 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 7 1051 - -
Ssu4g2983 1057 Pfam Cation transporting ATPase, C-terminus 817 1043 IPR006068 -
Ssu4g2983 1057 Pfam haloacid dehalogenase-like hydrolase 365 746 - -
Ssu4g2983 1057 Gene3D - 378 631 IPR023299 GO:0000166
Ssu4g2983 1057 SFLD C1.7: P-type atpase like 349 784 - -
Ssu4g2983 1057 Gene3D - 63 1045 - -
Ssu4g2983 1057 CDD P-type_ATPase_SERCA 13 1045 - -
Ssu4g2983 1057 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 1046 IPR023298 -
Ssu4g2983 1057 Gene3D - 365 777 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2983 Ssu-Chr4 76182660 76187388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2983 6 1054 Primary Pumps ATPases(2) AT4G00900 79.012 0.0 1717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2983 K01537 - gmx:100792952 1995.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2983 4 76182660 76187388 Ssu4g2983 4 76182660 76187388 ECH