Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2982 ATGAGGCCGGTTTTTGCTGGGAACTTGGAGTACGATACTCGTCAATCAGAGCTTGAACGCTTGTTCTCCAAGTATGGCAGGATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATATTCCATTTGGTCATGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGACGTCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCCTGTTTGTGATTAACTTTGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGGAATGTTCTTCATGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGTGATAATTATGACAGTCCTAGAAGAGGGGGTTATGAGAGATCGCCCAGTCCAGTTTATCACAGGCGACCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGCCTATGATAGGTATAATGGTGGACCAGACAGGCGGAGGAGTCCTGATTATGGCAGGCACAGAAGTCCTGATTATGGCAGGCGTAGGAGTCCTGATTATGGCAGGCACAGGAGTCCTGATTATGGGAAGCCCAAGAGTCCTGAATATGGTAGATATCGCAGCCGTTCACCTGTGCAAAGGTCAAGAACTTAA 795 0.4704 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYERSPSPVYHRRPSPDYGRPRSPAYDRYNGGPDRRRSPDYGRHRSPDYGRRRSPDYGRHRSPDYGKPKSPEYGRYRSRSPVQRSRT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2982 264 Gene3D - 1 83 IPR012677 -
Ssu4g2982 264 Gene3D - 84 173 IPR012677 -
Ssu4g2982 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Ssu4g2982 264 MobiDBLite consensus disorder prediction 206 251 - -
Ssu4g2982 264 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 202 IPR029537 GO:0000398|GO:0005681
Ssu4g2982 264 MobiDBLite consensus disorder prediction 164 264 - -
Ssu4g2982 264 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 202 - -
Ssu4g2982 264 SMART rrm1_1 92 158 IPR000504 GO:0003723
Ssu4g2982 264 SMART rrm1_1 3 70 IPR000504 GO:0003723
Ssu4g2982 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Ssu4g2982 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Ssu4g2982 264 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Ssu4g2982 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2982 Ssu-Chr4 76160414 76162848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2982 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 1.65e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2982 K12893 - gmx:100797709 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2982 4 76160414 76162848 Ssu4g2982 4 76160414 76162848 ECH