Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2979 ATGAATTGTGGTGATGTGTTGGCATTGCCTCCTGTGAGAAATGTGTTCAAGACAAGGGAGCCTCATGATTTTGAGGATGACTTTGAGGAGAAAGATCCAACCGGACGGTACATAAGGtACAATGAAATCTTGGGCAGGGGTGCCTTCAAAACCGTTTATAGGGGCTttgatgaagttgatggaatAGAAGTTGCTTGGAACCAAGTTAAGATTGATGGCCTCTTGCATTCAGTAGATGATCTTGCAAAATTGTATTCTGAAGTTAATCTATTGAAGTCTTTGAAACATGAAAATATCATTAAGTTCTATAATTCCTGGATTGATGATAAGCAGAATACTGTTAACATGATTACTGAACTCTTCACATCAGGAAATTTAAGGCAATATCGTAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTCAAGGCTTAGTATATCTTCACAGTCACAAGCCACCCATTATTCACAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAAGGTGAAGTTAAGATAGGAGACCTTggtttagcagttgtcatgcaACAACCAACTGCCCAAAGTGTTATTGgGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGGCATACACTGAACTTGTTGACATCTATTCTTTTGGGATGTGCATATTAGAGATGGTTACTCTTGAGTATCCCTATAGTGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTCAGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGACCCCCAAATTAAGGAGTTTATTGAGAAATGTCTGGTTCCAGCATCTGAGAGATTGTCGGCAGAGGAGCTTCTTAAAGACCCATTTCTACAAATTGAGAATCCAAAGGATCCAATCCTTTATCCTTTACAATCACCTAGCAAACCACCAAGAGCTATACATTCATCCAAGTCTGGTTCTCAATCCATGGACATTGATGCTGAGTACAAACAATTTTCTATAAGTAACTGTTCTGAAAGCAACCAGGGAACTCCACCTTATCCTGTTTTTGAAGTCCAGAGGACAAATAAGAACAACGAGTTTAGGTTGAAAGGGGCTAAAAATGATGATAACTCAGTATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCAGTCTCTGTGGCCACAGAGATGGTTGAGCATTTGGAGCTGGCAGATCATGATGTAGCTTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTCCCTTGGTGGAAGATTTCACCCGATCATCGCTCAGATGGAGAATTAAGTCTTTGTGGTACAAGTGTAGATAGTCAAACCTTAATGGCATGGCCATGGGGTTCTGTCCTAACTAGTATTCACTCTCAATTGGTTATTGGTCAGGATGGCTTCTCTGGGTTTAATACAACTCCCAAAGAAGATTTTGTGGTGGCTGAGAAGAGCGAATTTTCCAAAAATGTTGATAATGCTACTTTTGAGGGTGATTGTAATTTGTCCCCTAGTTTGGTTAACTTGGAAGATCGATATTCACAAGGATCTAGAGCTTCTGAAATAGTCGTTGAAAACACTTCTACGAAAAATGACAATTGTCATGATTCCAATGTTGATGTAAGTTTTAAATGCTCAAGTAGGTCCATCTCTGAACTTGAGGTTGGTGATGCAAATTATTGTGTTGGGGAAGGAGTTGAGCTGGGGTCCGTTCTTGGAACATCTACTAATGTTGGGAGCCCGACAAGTAGTTGTTCTTATGTGTCTTCAGCAGAAGAGGACATTGATCTTGAGCTACAGTTTGAACTTGATGTAATTGAGTCACACTATCAGCATTGGATTGATGAACTTAAGAAAATGAAGTTGGAGGCATTGGAAGCCACCAAAAGGAGATGGATGGCCAAGAAGAAATTGGCTGTTCTTTGA 1986 0.3872 MNCGDVLALPPVRNVFKTREPHDFEDDFEEKDPTGRYIRYNEILGRGAFKTVYRGFDEVDGIEVAWNQVKIDGLLHSVDDLAKLYSEVNLLKSLKHENIIKFYNSWIDDKQNTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILQGLVYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAVVMQQPTAQSVIGTPEFMAPELYEEAYTELVDIYSFGMCILEMVTLEYPYSECKNPAQIFKKVTSGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQIENPKDPILYPLQSPSKPPRAIHSSKSGSQSMDIDAEYKQFSISNCSESNQGTPPYPVFEVQRTNKNNEFRLKGAKNDDNSVSLTLRIADTCGRVRNIHFLFYLDTDTAVSVATEMVEHLELADHDVAFIAELIDYLIMKLLPWWKISPDHRSDGELSLCGTSVDSQTLMAWPWGSVLTSIHSQLVIGQDGFSGFNTTPKEDFVVAEKSEFSKNVDNATFEGDCNLSPSLVNLEDRYSQGSRASEIVVENTSTKNDNCHDSNVDVSFKCSSRSISELEVGDANYCVGEGVELGSVLGTSTNVGSPTSSCSYVSSAEEDIDLELQFELDVIESHYQHWIDELKKMKLEALEATKRRWMAKKKLAVL 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2979 661 Gene3D Transferase(Phosphotransferase) domain 1 121 300 - -
Ssu4g2979 661 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Ssu4g2979 661 PANTHER KINASE DOMAIN PROTEIN 5 659 - -
Ssu4g2979 661 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 434 IPR024678 GO:0004674|GO:0005524
Ssu4g2979 661 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2979 661 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 659 - -
Ssu4g2979 661 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2979 661 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2979 661 CDD STKc_WNK 36 295 - -
Ssu4g2979 661 Gene3D - 376 443 - -
Ssu4g2979 661 SUPERFAMILY Protein kinase-like (PK-like) 40 342 IPR011009 -
Ssu4g2979 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2979 Ssu-Chr4 76121956 76125489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2979 25 438 MAP Kinase Kinase Kinase AT5G41990 62.679 7.22e-175 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu4g2979 Pkinase 7.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2979 K08867 - gmx:100809602 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2979 4 76121956 76125489 Ssu4g2979 4 76121956 76125489 ECH