Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2975 ATGGGAAGGGCTCCCTGTTGTTCTAAAGTTGGGTTGCACAAAGGTCCATGGACTCCCAAAGAAGATGCATTGCTTACCAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTCCCAAAAAAAGCTGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGGAACATAACTCCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGAAATAGATGGTCCCTCATAGCAGGAAGGTTACCAGGAAGAACAGACAACGAGATAAAGAATTATTGGAATACCCATCTAAGCAAAAAGCTGAAAAATCAAGGAACAGATGACACTAACACACACAACACGTTAGAGAACCCCCAACAAGAGCCTGCCTGTGgcaacaaaaagaagaagaacggTGGCAAAAAGAAGAATAAGCAGAAGAACAAAGGCACAAATAATGCTGAGCCACCAAAGACCCAAGTTTACCTACCAAAACCCATTAGAGTTAATGCTTTGTATTTACCAAGAACGGATAGTGGCACCTTCACCTTTGATTCCAATTCAGCTAGTGCATCAACAAGCCAAGAAAAGGAGGAAAGTCCCATGACAAAAGAATCAAACGTGGTTTGTGGAATTGGTAATGAGGGAGAAAGTGATGGTTTTGGCTTCTTCAATGTGGACCATGACTTAGTCAACGGATCAGATAATATTGAATGCCAGTCTTATTTTCCTACGGATCATGGCACCCTACAGAAACTATATGAAGAATATTTCCAGCTCTTGAACATGGAGAATAGCCCATTCGAAATGAGTTCTTTTGAGGAATCTTTATTGGAGTGA 864 0.3981 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKNQGTDDTNTHNTLENPQQEPACGNKKKKNGGKKKNKQKNKGTNNAEPPKTQVYLPKPIRVNALYLPRTDSGTFTFDSNSASASTSQEKEESPMTKESNVVCGIGNEGESDGFGFFNVDHDLVNGSDNIECQSYFPTDHGTLQKLYEEYFQLLNMENSPFEMSSFEESLLE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2975 287 SMART sant 66 114 IPR001005 -
Ssu4g2975 287 SMART sant 13 63 IPR001005 -
Ssu4g2975 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu4g2975 287 MobiDBLite consensus disorder prediction 191 213 - -
Ssu4g2975 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu4g2975 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu4g2975 287 Gene3D - 69 132 - -
Ssu4g2975 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu4g2975 287 PANTHER MYB TRANSCRIPTION FACTOR 1 273 - -
Ssu4g2975 287 CDD SANT 16 61 IPR001005 -
Ssu4g2975 287 MobiDBLite consensus disorder prediction 117 171 - -
Ssu4g2975 287 Gene3D - 14 66 - -
Ssu4g2975 287 MobiDBLite consensus disorder prediction 191 205 - -
Ssu4g2975 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu4g2975 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu4g2975 287 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu4g2975 287 CDD SANT 71 112 IPR001005 -
Ssu4g2975 287 MobiDBLite consensus disorder prediction 122 136 - -
Ssu4g2975 287 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2975 Ssu-Chr4 76010249 76011322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2975 1 125 MYB Transcription Factor Family AT4G38620 73.600 1.28e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2975 Myb_DNA-binding 9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2975 K09422 - gmx:100803345 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2975 4 76010249 76011322 Ssu4g2975 4 76010249 76011322 ECH
Ssu4g0110 4 1819625 1821961 Ssu4g2975 4 76010249 76011322 PCT