Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2965 ATGGCACATCTGGAGTGTAATCCGAGGGGCCCCGGGATTGGTAGTTCTCAACCGGAAAAAGGTTTGAAGGATGATGATCTGTATAGCGAGCTATGGAATTTGTGTGCAGGGCCGTTGGTGGATGTTCCTCGCACTGGGGACAGAGTTTTCTACTTCCCCCAGGGTCACATGGAACAATTGCAAGCATCTACGGATCAAGAATTGAACCAGGAAATTCCCCATTTCAATCTCCCGGCCAAGATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGgCGGAACAAGACACTGATGAGGTTTATGCTTGTATTGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTACAAATCCTGATCCAAGTGTTTCTGAGGCCCCAAAACAGAAGTTTCACTCATTTTGCAAGATGTTAACTGCCTCTGATACAAGCACACATGGAGGATTTTCGGTTTTGCGGAAGCATGCTACTGAGTGCCTGCCTTCATTGgaCATGAATCAAGCAATCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATATAGGGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTTGCATCTAAAAGACTGGTTGCTGGAGATGCTTTTGTGTTTCTAAGGGGAGAGCATGGACAATTGAGAGTTGGTGTTAGGCGTTTGGCACGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCACCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGTACCATGTTTCTGGTTTATTACAAGCCAAgGACTAGCCAGTTTATTGTTGGTTTGAACAAATATCTGGAGGCAGTCAACAATAAATTTTCAGTTGGCATGCGATTCAAGATGAGATTTGAGGGAGATGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGAGTTGGGGATGTGTCTCCAGGATGGTCAAATTCTCAGTGGCGGTCGTTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGGCCAGATAGAGTTTCTTGCTGGGAGATAGAGCCTTTTGTAGCTTCTGCTGCTTTGAATGTGACTCAACCAGCAGTGAAGGGCAAAAGGTCTAGGCCTGCTGATGTTTCATCTTCTGCTGCTTCAGGTCTCTGGTATCATGGTTCTTCCCAGTCTCATGAGCTTAGTCAATTAGGTGCTGCTACTGCTGAAGTCCAAAGCAAGGAAAATCAGGTTTCATGTTCTCTGAGGCAGAAAGACGTTATTATTAATAGCAATCCTATTAATGCTAACTCTAGCAGCAGCTCTAGAGTCCGGGTAGAAGGAGTTTGGCCTTCTTCACCACACTTGAATGTCACTTCTAACCTTTTTTCCGATCCCAGTAACAACAATGGCGTTTTGGCACGATCATCTATCTCTGGTTATCCTAATGTTCCATCTAGATCAAGTGATGGCCCCACATGTGACCGAGTGGAAGATGGGAAAAAGACTGAGAATTCCCCTGATTGCTGGTTATTTGGAGTTAATTTGACTAACAATTCTAGCAATGTTATTAATTCCCTTGATGGCTTAAGTATTGTTCCTACTAGTGGTCCCAAAGAATCTATTCCTGCAGCTGCATGTGAAACTGAGAGGGTTCAGACTCCCAACTATTCACTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGAGGCATCACCAAATGAGTGGCAGAACAAGCAGGCCACTGTACCATCCATGAGGACGCGGACTAAGgTGCGAATGCAAGGAATTACTGTTGGTCGTGCATTTGACTTGACCACGTTGAGTGGCTATGATGATCTCATAGACGAGCTtgagaaattgtttgacatCAGAGGAGAGCTGCGTTCACAAAACAAATGGGCAGTTACTTTCACAGATGATGAAAATGACACGATGCTTGTGGGTGATGATCCATGGCCGGAGTTCTGCAACATGGTGAAGAGGATTTTCATTTGTTCAAGGGaggacttgaagaagatgaaatGCTGCAAGCTACCTACTTCTTCGTCAGAGGTTGAAGAGACCCTGTTGAGTCCAGATTCACAGAATAGGGATGAGACTCAACAGTCTCATATGCCTTAG 2127 0.4433 MAHLECNPRGPGIGSSQPEKGLKDDDLYSELWNLCAGPLVDVPRTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPAKIFCRVVNIQLLAEQDTDEVYACIALLPESDQTEPTNPDPSVSEAPKQKFHSFCKMLTASDTSTHGGFSVLRKHATECLPSLDMNQAIPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDVSPGWSNSQWRSLKVQWDEPATIPRPDRVSCWEIEPFVASAALNVTQPAVKGKRSRPADVSSSAASGLWYHGSSQSHELSQLGAATAEVQSKENQVSCSLRQKDVIINSNPINANSSSSSRVRVEGVWPSSPHLNVTSNLFSDPSNNNGVLARSSISGYPNVPSRSSDGPTCDRVEDGKKTENSPDCWLFGVNLTNNSSNVINSLDGLSIVPTSGPKESIPAAACETERVQTPNYSLSNKGQKQIISEASPNEWQNKQATVPSMRTRTKVRMQGITVGRAFDLTTLSGYDDLIDELEKLFDIRGELRSQNKWAVTFTDDENDTMLVGDDPWPEFCNMVKRIFICSREDLKKMKCCKLPTSSSEVEETLLSPDSQNRDETQQSHMP 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2965 708 MobiDBLite consensus disorder prediction 681 708 - -
Ssu4g2965 708 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 685 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu4g2965 708 SUPERFAMILY DNA-binding pseudobarrel domain 120 261 IPR015300 -
Ssu4g2965 708 Pfam AUX/IAA family 632 670 IPR033389 -
Ssu4g2965 708 MobiDBLite consensus disorder prediction 683 708 - -
Ssu4g2965 708 ProSiteProfiles PB1 domain profile. 588 669 IPR000270 GO:0005515
Ssu4g2965 708 CDD B3_DNA 130 232 IPR003340 GO:0003677
Ssu4g2965 708 Pfam Auxin response factor 258 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu4g2965 708 Gene3D - 129 233 IPR015300 -
Ssu4g2965 708 SMART B3_2 132 234 IPR003340 GO:0003677
Ssu4g2965 708 Gene3D - 584 676 - -
Ssu4g2965 708 PANTHER AUXIN RESPONSE FACTOR 11 13 685 - -
Ssu4g2965 708 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g2965 708 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Ssu4g2965 708 Pfam B3 DNA binding domain 132 232 IPR003340 GO:0003677
Ssu4g2965 708 Gene3D - 293 365 - -
Ssu4g2965 708 MobiDBLite consensus disorder prediction 480 504 - -
Ssu4g2965 708 SUPERFAMILY CAD & PB1 domains 584 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2965 Ssu-Chr4 75857855 75862039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2965 27 675 B3 DNA Binding Superfamily AT4G23980 55.015 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu4g2965 B3 2.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2965 K14486 - gmx:100795763 1255.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2965 4 75857855 75862039 Ssu4g2965 4 75857855 75862039 ECH