Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2963 ATGGAGCAACAGCCACACAACAGCGCCGCCGACGACGAGGCGACCTCGAGCACCGCCGACAGCAAACCGACCACCCCGCGCGGCGGCACGCGCCACCCGCTCTTCCGCGGCGTCCGGAAGCGGCGGTGGGGCAAGTGGGTCTCCGAAATCCGGGAGCCGCGCAAGAAGTCCCGCATATGGCTGGGGTCCTTCCCGGCGCCGGAGATGGCCGCCAAGGCCTACGACGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAACTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCCTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCCGCCCACATGGTGATGGTCACCGCCGCCGCGCCGGAAAAGACCAGCATTGCCGACGACGCCGCCGACGACTTCTGGCGCGAGATTGAGCTCCCGGAGCTCCTCAACGGCACCAAGTGGTGGACCTCCTCCGGCGACGTCACGCCGTGGCCGGAGCCCGAGCTCCCGCCGCAGCAACCCTTCACCACGGCGTGCTTGTAG 546 0.7125 MEQQPHNSAADDEATSSTADSKPTTPRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAAHMVMVTAAAPEKTSIADDAADDFWREIELPELLNGTKWWTSSGDVTPWPEPELPPQQPFTTACL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2963 181 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Ssu4g2963 181 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g2963 181 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Ssu4g2963 181 MobiDBLite consensus disorder prediction 160 181 - -
Ssu4g2963 181 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Ssu4g2963 181 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Ssu4g2963 181 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Ssu4g2963 181 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
Ssu4g2963 181 MobiDBLite consensus disorder prediction 1 37 - -
Ssu4g2963 181 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Ssu4g2963 181 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 181 - -
Ssu4g2963 181 CDD AP2 33 92 IPR001471 GO:0003700|GO:0006355
Ssu4g2963 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2963 Ssu-Chr4 75768135 75768680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2963 14 157 AP2-EREBP Transcription Factor Family AT1G01250 63.194 9.74e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g2963 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2963 K09286 - gmx:100802845 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0118 4 2010046 2010594 Ssu4g2963 4 75768135 75768680 PCT