Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2962 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAGGAGAAAGCGATGGTGGTGGAGGTTCTGGGCCGCGGGGCGTTCGATTACTTGGCGGCGAATTCGGTTTCAAACGAGAATCTGTTAATGGCGTTTGGGAGCGGGGAGAATCTGCAGAACAAGCTCTCGGATCTCGTGGAGCGGCCCAACGCGTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTATGGGGATTGGGTTCTGGGGTGGGGGGACGGGTGTTGCAGGGAGCCGAGGGAGGGAGAGGAGGGTGGAGAAGGGAGAGTGAGAGGGAGAGGGATGGTGGATGATGATGGTGATCGTGATGGGAAGGTGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACACGACGTTTGGGGGTTCGGATGAGGACAATTATGCTTTTGGGTTGGACCGTGTGACTGACACGGAGATGTTCTTTCTTGCCTCCATGTACTTCTCTTTTCCCCTTGGAGTTGGGGGTCCAGGTAAGTGTTTTGCCTCTGGGAAGCATTTGTGGCTCTCGGATGTGTTGAAATCTGGCTTGGATTACTGTGTGAGGTCTTTCCTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTGCCTACGGATTTGGGGGTGGTGGAGATGGGGTCTGTGAGGATTGTGGGTGAGAGTTTTGAGTTGTTGCATGCTGTCAAATCTGTGTTTTCTGCGCAGGCATCGTTAGTACCCCCCAGGGTTAAGCCAATTGCACCATTGGATTTGGTGATTGAGAAGAGAGATGAGAATGCGAATGCGAATGCGAATGCTCTCTTTTCTGGTTTGGCAATTGGggataagaataagaataacaacaatGGTAATAGTAGAGTAGAGGGAATTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAATTGTGTGACTCAATTCAGGGAGAAACTTGCTGTGAGGAAAATGGAGGAGAGGCCGAGGCCGAGGCCGTGGGGAGGCCATACCAATGGGAATAGTATTGGATTTCCGAATGGTTCTGGCTGGGGGACTGGTCAAGTTGTGAGGCAGCCTGGTCCTCCTGAAATTTTTGCTCCTAGGTTGTCGAATGTGCCGGAGCTAGCCAATGGCACGAGGCAGGATTTTGTGCGTAACAACTATCAGCAGCAACGGCAGGGACAAATGCAGATTGATTTTTCGGGAGCCACTTCGAGGCCTTCTGCGAGATCAATGATTGCTGAGTCTGAGATTTCTGATGTCGAGGCGTCTTGCAAGGAGGAGAAAGTGAGTGTTGCTGAGGACAGGAGGCCGAGGAAGCGGGGGAGGAAGCCAGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGGTTCTATGCGCTGCGAGCTGTTGTTCCGAATATCTCTAAGATGGACAAGGCGTCCCTGTTGGGAGATGCTATTGCTTACATCAATGAGCTTCAAGCAAAACTCAAGACCATGGAGtctgagagagagagatttggaAGCAGCTCTGTGGATGGATCGGTATTGGAAGCCAACGCAAGTGTGGAAGATCATCAGATTAGAGCTCTGGATGTGGATGTTCAAGCTGCACAAGATGGGGTCATTGTAAAGTTAAGTCACAAGGACCTGATCAGCTGA 1692 0.5024 MKIEVGLGGVWNEEEKAMVVEVLGRGAFDYLAANSVSNENLLMAFGSGENLQNKLSDLVERPNASNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPREGEEGGEGRVRGRGMVDDDGDRDGKVQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPLGVGGPGKCFASGKHLWLSDVLKSGLDYCVRSFLAKSAGIQTVVLVPTDLGVVEMGSVRIVGESFELLHAVKSVFSAQASLVPPRVKPIAPLDLVIEKRDENANANANALFSGLAIGDKNKNNNNGNSRVEGIGVPKIFGQDLNCVTQFREKLAVRKMEERPRPRPWGGHTNGNSIGFPNGSGWGTGQVVRQPGPPEIFAPRLSNVPELANGTRQDFVRNNYQQQRQGQMQIDFSGATSRPSARSMIAESEISDVEASCKEEKVSVAEDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSSSVDGSVLEANASVEDHQIRALDVDVQAAQDGVIVKLSHKDLIS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2962 563 SMART finulus 460 509 IPR011598 GO:0046983
Ssu4g2962 563 MobiDBLite consensus disorder prediction 394 415 - -
Ssu4g2962 563 MobiDBLite consensus disorder prediction 98 121 - -
Ssu4g2962 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Ssu4g2962 563 Coils Coil 493 520 - -
Ssu4g2962 563 Gene3D - 447 519 IPR036638 GO:0046983
Ssu4g2962 563 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 557 - -
Ssu4g2962 563 MobiDBLite consensus disorder prediction 433 465 - -
Ssu4g2962 563 Pfam Helix-loop-helix DNA-binding domain 458 504 IPR011598 GO:0046983
Ssu4g2962 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 517 IPR036638 GO:0046983
Ssu4g2962 563 PANTHER MYC 1 557 IPR045084 GO:0003700|GO:0006355
Ssu4g2962 563 CDD bHLH_AtAIB_like 451 516 - -
Ssu4g2962 563 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 245 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2962 Ssu-Chr4 75719720 75721536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2962 10 557 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.813 2.15e-172 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g2962 bHLH-MYC_N 1.7e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2962 - - gmx:100807078 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2962 4 75719720 75721536 Ssu4g2962 4 75719720 75721536 ECH
Ssu4g0120 4 2050007 2051827 Ssu4g2962 4 75719720 75721536 PCT