Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2961 ATGATAAGGAAGCGGGGGAGGAAGCCGGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAAAGAGGCAAAGGTGGGAGAAGCTGAACCAGCGGTTCTATGCGCTGCGAGCTGTTGTTCCGAATATCTCTAAGATGGACAAGGCGTCCGTGTTGGGAGATGCTATTGCTTACATCAATGAGCTTCAAGCAAAACTGACCATGGAGtctgagagagagagatttggaAGCACCTCTATAGATGGATCGGTATTGGAAGCCAACGCAAGAGTGGAAGATCATCAGATTAGAGCTCCGGATGTGGATGTTCAAGCTGCACAAGATGGGGTCATTGTAAAGGTGAGCTGTCCTATTGATGTTCACCCCGTTTCAAAAGTCATTCAAACATGCAAAGAGGCAGAAATTGGTGTTGTTGAATCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAGTCACAAGGACCTGATCAGCTGACAAAGGAGAAGTTGATTGCATTGTTTTCCAAAGAATCCAACACCATACAGACATTGTGA 552 0.4366 MIRKRGRKPANGREEPLNHVEAKRQRWEKLNQRFYALRAVVPNISKMDKASVLGDAIAYINELQAKLTMESERERFGSTSIDGSVLEANARVEDHQIRAPDVDVQAAQDGVIVKVSCPIDVHPVSKVIQTCKEAEIGVVESKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKESNTIQTL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2961 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 63 IPR011598 GO:0046983
Ssu4g2961 183 PANTHER MYC 3 178 IPR045084 GO:0003700|GO:0006355
Ssu4g2961 183 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 3 178 - -
Ssu4g2961 183 SMART finulus 20 69 IPR011598 GO:0046983
Ssu4g2961 183 Pfam Helix-loop-helix DNA-binding domain 18 64 IPR011598 GO:0046983
Ssu4g2961 183 Gene3D - 8 77 IPR036638 GO:0046983
Ssu4g2961 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 72 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2961 Ssu-Chr4 75677307 75679596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2961 3 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 59.669 2.21e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g2961 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2961 - - ccaj:109808433 309.686