Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2951 ATGCGACTTCGGCGATTCAGAAGAAGCGTAGGGTTAACGGGTTTTACTCTCTCGGCATGCCCGGCGACGCTGAGTATTTCAGCAGCGGTTCCGGCTCTTGGAGCAGCGAAGGATCGTAttggggtggtggtggtgaggtTCAGTCCAATTCAAATTCCGTGCCGTTTAATCGCAAAAACGGTGCCACTTAATCGCAAAACGGCGAAGGGAGCGCGTCTGCCTCCGCTGCTGCGGTCCTCGCGTGGGCGCGTCCAGAAGCTTCCGTCGAGGTTCAATGACTCGGTTCTTGACGCGTGGAAGAAagcggaggaggaggaggaaaacGGAGACTCGAGCTTCGAAGATGATGATAAGAGTTTTGTGGAGGATGGTAGGCGTGGCATTGGTGTAAAAGTGGAGAAGAGTGATAGTGTGTGTTATTCTTCTAGGACTGTTAAGGCTGAGAGTAATACGTCTGGGATTACTTTTGAGGGTGTGGACCAAAAGCCCAATGGGGAGAAGAGGAAAGAGGTTTACAAGCCGGAGGATTTTACTTTGGGGGACATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTGGTGATTGATCCTGTCTTGGAGGCTCCCAACTCTGTACTCAGCTGTTGCGTTCCCGGCACGCTTTGCGTGATGTTTTTTGGTTATTCGAAGAATGGAACTCAAAGGGATTACGCTTGGGTGAAGCAGGGAATGGTATTCCCCTTCTTGGAATTCATGGACAGGTTTCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCACTGGAGGAGGCTATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAGGAGAGGAAGTAGCTGATGTAGAACATCGTCGTGATGGACTTATGGAGGCCATGGGTTCGTATGTTGATCAGGAATATTATGGCCAGGATCAGGAAACAAGGTATTGCGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAATTGTGCACCCCAATTTTATTGCAAACATTGTGCTAAGttacaaaaatcaaaacaatattgTGGCATTTGCAAAAGGATTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGTTGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATTTCTGGTAAACTTTTCAAGGATTTGGAAAATACAGATTACTATTGTCCAGATTGCAAGAAATTACCAACATCACAAGCATTCAAGTCGAAAATCAAATCAATAGAGAGTAGCCAAAAATCTATGATACCTGAGAAAGTATTGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTCAGTGAATGGGAAAAACATACAGGTTGCAGAGCGAAAAAGTGGAAACATAGTGTGAAAGTGAAAAGCACAATGCTACCACTGGAAAAATGGGTATGTAATATCTTATGTCACATAGCAGATACATgctttcttttgaatatatctttaaagacaaatttattttacttctacCTTATTGTCACAGAGAAGTATGAGCCAGTTAATGCAAAGTGGACAACAGAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTGGgaagataacaaaattattatttgtaacaGATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCCAGAGGAATCCTTAAAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTGATCTGTAAACAGAGCCATGGTTCCTGTATAACTTGTTGCAAGTGTGCTACTTattttcatgtgatgtgtgcaTCAAGGGCAGGATATACAATGGAATTGCATTCCATAGAGAAGAATGGAACTCAAATAACAAAGAAGCTAATATATTGTGCAATTCACAGGGTCCCAAATCCAGATTCAGTACTGGTCGTACACACACCCCTGGGGGTTTTCTCTCCCAGAACTTCACTTCAAAATCAGAAGGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAGTATATAGAGCTTAATGAATTGTCAACCACTGAAAATGACATAGTTGAGTCGCTGTCTGCTGCCAGATGTCGTGTGTACCGAAGGTCTCCTAATAAGAGGGCTGATGTGCCAATAATTCACTTGCTGAGGGGACCCAGCCTTCATTCTTTGGGTGCAATAACTCGGTTGAACCACTACAAGGATGCTGAAGAATCTAAAGTTTTCACTTCTTTCAAGGAACGTCTTCACCATTTACGGAAAACGGAAAAACTTAGAGTTTGCTTTGGAAAATCGGGCATTCATGGATGGGGTCTCTTTGCACGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCGGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATACCGTTCAGAAGGCAAAGATTGCTATcTGTTCAAGATCAGTGAGGAAGTGGTAGTTGACGCAACGCACAGAGGCAATATAGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCGAGGATTATGAGTCTGGGAGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGCTGGTGAAGAATTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGAAGATTTATGAATTAG 2937 0.4232 MRLRRFRRSVGLTGFTLSACPATLSISAAVPALGAAKDRIGVVVVRFSPIQIPCRLIAKTVPLNRKTAKGARLPPLLRSSRGRVQKLPSRFNDSVLDAWKKAEEEEENGDSSFEDDDKSFVEDGRRGIGVKVEKSDSVCYSSRTVKAESNTSGITFEGVDQKPNGEKRKEVYKPEDFTLGDIVWAKCGKRYPAWPAVVIDPVLEAPNSVLSCCVPGTLCVMFFGYSKNGTQRDYAWVKQGMVFPFLEFMDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGGEEVADVEHRRDGLMEAMGSYVDQEYYGQDQETRYCAGCGLMLPCKTMKKIKDSNCAPQFYCKHCAKLQKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKISGKLFKDLENTDYYCPDCKKLPTSQAFKSKIKSIESSQKSMIPEKVLVVCNGMEGIYIPKLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWVCNILCHIADTCFLLNISLKTNLFYFYLIVTEKYEPVNAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPARGILKIPPNSFVKTCVICKQSHGSCITCCKCATYFHVMCASRAGYTMELHSIEKNGTQITKKLIYCAIHRVPNPDSVLVVHTPLGVFSPRTSLQNQKGCFRGSRLISSKYIELNELSTTENDIVESLSAARCRVYRRSPNKRADVPIIHLLRGPSLHSLGAITRLNHYKDAEESKVFTSFKERLHHLRKTEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVRVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATHRGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRRFMN 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2951 978 SUPERFAMILY FYVE/PHD zinc finger 545 609 IPR011011 -
Ssu4g2951 978 Gene3D SET domain 814 978 IPR046341 -
Ssu4g2951 978 PANTHER PHD FINGER PROTEINS 98 978 - -
Ssu4g2951 978 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Ssu4g2951 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 714 IPR013083 -
Ssu4g2951 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 541 595 IPR013083 -
Ssu4g2951 978 SUPERFAMILY FYVE/PHD zinc finger 358 414 IPR011011 -
Ssu4g2951 978 ProSiteProfiles Extended PHD (ePHD) domain profile. 598 713 IPR034732 -
Ssu4g2951 978 CDD PHD_TCF19_like 361 411 - -
Ssu4g2951 978 SMART PWWP_4 177 246 IPR000313 -
Ssu4g2951 978 ProSiteProfiles PWWP domain profile. 179 248 IPR000313 -
Ssu4g2951 978 SUPERFAMILY SET domain 832 974 IPR046341 -
Ssu4g2951 978 ProSiteProfiles Zinc finger PHD-type profile. 358 414 IPR019787 -
Ssu4g2951 978 Pfam PHD-finger 360 413 IPR019787 -
Ssu4g2951 978 Pfam PHD-finger 559 593 - -
Ssu4g2951 978 Pfam PHD-zinc-finger like domain 600 712 - -
Ssu4g2951 978 CDD SET_SETD1-like 825 974 - -
Ssu4g2951 978 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 6 978 IPR025780 -
Ssu4g2951 978 ProSitePatterns Zinc finger PHD-type signature. 547 592 IPR019786 -
Ssu4g2951 978 ProSiteProfiles SET domain profile. 836 953 IPR001214 GO:0005515
Ssu4g2951 978 ProSiteProfiles Post-SET domain profile. 962 978 IPR003616 -
Ssu4g2951 978 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 416 IPR013083 -
Ssu4g2951 978 SMART set_7 836 959 IPR001214 GO:0005515
Ssu4g2951 978 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 98 978 - -
Ssu4g2951 978 CDD PHD_ATX3_4_5_like 546 592 IPR042011 -
Ssu4g2951 978 SMART PHD_3 657 713 IPR001965 -
Ssu4g2951 978 SMART PHD_3 360 412 IPR001965 -
Ssu4g2951 978 SMART PHD_3 546 593 IPR001965 -
Ssu4g2951 978 ProSiteProfiles Zinc finger PHD-type profile. 544 595 IPR019787 -
Ssu4g2951 978 SUPERFAMILY Tudor/PWWP/MBT 170 295 - -
Ssu4g2951 978 Pfam PWWP domain 180 276 IPR000313 -
Ssu4g2951 978 Gene3D - 166 282 - -
Ssu4g2951 978 SMART PostSET_3 962 978 IPR003616 -
Ssu4g2951 978 Pfam SET domain 847 952 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2951 Ssu-Chr4 75468971 75477252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2951 547 699 C2H2 Transcription Factor Family AT3G14740 35.185 1.28e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu4g2951 zf-HC5HC2H_2 2.8e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2951 - - gmx:100793624 1650.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2951 4 75468971 75477252 Ssu4g2951 4 75468971 75477252 ECH