Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2949 ATGGGCATCTTGGAAGTTCTTTTTCCCTTCTTCATCTTTCCTGTCATATATGCCTCAAATGATTGCCAATTTTCTTTATGTGGCAACGATACTATCCTTATTCGTTTCCCCTTTCAACTAAAAGGTGAGCAGCATCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGTACGAATAATAGCAAAACAGTGCTAAAACTTCCTTACTCTGGGGAATTTTATGTGCGCAATATTAACTACCTCACACAAAAGATACAAGTCTACGACCCTGATGATTGCCTCCCCAAACGTCTTCTGAGCCTCAATGTCTCAGGTTCTCCTTTTATTCCCACTTTTACTCGTAACTACACCTTCTTAAGCTGCCCATTTCAGAACGCAGGGTCACAATTCATTCCCATCGACTGCCTCAGTAATTCCACAAATTTTGTATCAGCTGTCCCTTCACTGAACTTGACCAATCCATTGCCTGAGTCTTGCTATGGTATTACAAGGTTTTCAGTCCCAGTTGCAAGGCCAGAGCAGCAGTATGAGAAGAATCACAGAGATGAGCTTAGTGAAGATCTTCGATTAACATGGGATAAACCTGACTGCAGATATTGTGAATCACGAGAACAATTATGTGGGTTTGATCgaaacaacaacaatcaacttTTCTGTTTCTCTTACCAAACAGACACTTCACAATCACAACGTGGAGTCCAAGTTTTTAGAATCATCACATTATGCATTGCTGGACCAGCAGCCGTCTTTGCAATTGTGATGGCATGCTGTGTGTGCTGCAAGGACAAAATAACCAACATTCGTAACAATACCACTCCTCAGAGGTCTGCACCAGCTACAACATCACCAGCACCGCAAGTTGTGACTGCGGGTCTGGACGAGTCCACGATTGAGTCTTACGAGAAGGTAGTGCTTGGAGAGAGTCGACGAGTTCCTGGACCCAACGGTGGATGCTGTTGGATATGCTTGTCGGAGTACAATAGCAAAGAGACAATAAGATGCATTCCTGAATGCAAACACTGCTTCCATGCTAATTGCATAGACGAGTGGCTTCGCATCAACACCACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTCTTTTTGTTACGTCCATTAACCCCTAA 1131 0.4306 MGILEVLFPFFIFPVIYASNDCQFSLCGNDTILIRFPFQLKGEQHPYCGYPGFNLICTNNSKTVLKLPYSGEFYVRNINYLTQKIQVYDPDDCLPKRLLSLNVSGSPFIPTFTRNYTFLSCPFQNAGSQFIPIDCLSNSTNFVSAVPSLNLTNPLPESCYGITRFSVPVARPEQQYEKNHRDELSEDLRLTWDKPDCRYCESREQLCGFDRNNNNQLFCFSYQTDTSQSQRGVQVFRIITLCIAGPAAVFAIVMACCVCCKDKITNIRNNTTPQRSAPATTSPAPQVVTAGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECKHCFHANCIDEWLRINTTCPVCRNSPSPSPLFVTSINP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2949 376 Pfam Ring finger domain 319 361 IPR001841 -
Ssu4g2949 376 Pfam Wall-associated receptor kinase C-terminal 156 221 IPR032872 -
Ssu4g2949 376 SUPERFAMILY RING/U-box 315 363 - -
Ssu4g2949 376 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Ssu4g2949 376 SMART ring_2 319 360 IPR001841 -
Ssu4g2949 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 366 IPR013083 -
Ssu4g2949 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 369 - -
Ssu4g2949 376 ProSiteProfiles Zinc finger RING-type profile. 319 361 IPR001841 -
Ssu4g2949 376 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2949 Ssu-Chr4 75435825 75439057 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2949 27 366 C3H Transcription Factor Family AT2G25410 43.895 8.16e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2949 - - gmx:100798415 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0130 4 2171853 2173951 Ssu4g2949 4 75435825 75439057 PCT