Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2946 ATGGATGGCTTTGAAATGAGTTCAAGTACTTCACAATCACAACGTGGAGTCCAAGTATTTAGAATCATTACATTATGCATTGCTGGACCTGCAGCCGTCTTTGCAATTGTGATGGCTTGCTGTGTGTGCTACAAGGACAGAATAGCCAACATTCGTAACAATGCCACTCCCCAGAGGTCTGCACAAGCTACAACATCACCAGCACCACAAATTGTGACTGCGGGTCTGGACGAGTCCACGATCGAGTCTTACGAGAAGGTAGTGCTTGGAGAGAGTCGACGAGTTCCTGGACCCAACGGTGGATGTTGTTGGACATGCTTGTCGGAGTACAATAGCAAAGAGACAATAAGATGCATTCCTAAATGCAAACACTGCTTCCATGCTGACTGCATAGAGGAGTGGCTTCGCATCAACATCATATGCCCAGTTTGTCGTAACTCTCCCTCCCCTTCTCCTCTCTGTGACGTCCATTAA 474 0.4726 MDGFEMSSSTSQSQRGVQVFRIITLCIAGPAAVFAIVMACCVCYKDRIANIRNNATPQRSAQATTSPAPQIVTAGLDESTIESYEKVVLGESRRVPGPNGGCCWTCLSEYNSKETIRCIPKCKHCFHADCIEEWLRINIICPVCRNSPSPSPLCDVH 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2946 157 ProSitePatterns Zinc finger PHD-type signature. 103 144 IPR019786 -
Ssu4g2946 157 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 154 - -
Ssu4g2946 157 Pfam Ring finger domain 103 145 IPR001841 -
Ssu4g2946 157 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Ssu4g2946 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 150 IPR013083 -
Ssu4g2946 157 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 154 - -
Ssu4g2946 157 SUPERFAMILY RING/U-box 99 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2946 Ssu-Chr4 75357557 75358399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2946 16 150 C3H Transcription Factor Family AT2G25410 45.985 1.57e-39 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2946 4 75357557 75358399 Ssu4g2946 4 75357557 75358399 ECH