Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2934 ATGACAGCAAAGGGACAGAAATTTGTGAGGTTTAAGGATTGGAAGTCACTTTCATCTTCAAGTATTGAGCACAATGATTCTACTAGTGACGGATTTCACAAAAGAAAAGTTCAATCGAGCGTAAGTTCTGTCAGTGATGGATCAATAAATACATTGTCTTGTAAGAGCAATGTTCTTGATCCACAGGGGCCAACACTTCAGAAGTGgaacaaaatttttgtaatcacATGCGTGATGGCAATCTCTGTGGACCCGCTTTTCTTTTACATCCCAACGATTGATGACAAGAAAAAATGCCTTGATTTGGATGGAACATTGAATATTACTGCCAGTGCTCTCCGCACATTCTTTGATCTTTTCTACGTTCTTCACATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCTCGTGTATTTGGAAGGGGTGAACTAGTTGATGATACTAGTGCCATAGTGATGAGATACTTAAGCTCTTACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATCATCCCGTTCCCAAAATGCTCAGCACCAAATGTGGGAAAGGATTTGTTGAAGTATACGGTAATAGCTCAGTACGTGCCAAGACTTCTGCGGATCTACCCGTTATTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTACAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCATTCTGGTATCTGTTTTCAGTTGAATCAAGGGTGCGGTGCTGGCGCAGGCAGTTGAAGAATGCTACGATCTTTAATGAATCCTACCTTAGCTGTGGACGTGATAACAATTATACTGTTCAATCACTTCTCAGTTCTTCTTGCCCTTTCACTGATCCACAAAGCATCACAGACCTGGAAACTTTCAATTATGGAATGTTTGCAGACGCTCTAAAGTCTCACGTGGTAGATTCAACTACAGATTTTCATCACAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTCTCCAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTAGAAGAGATGAGAATCAAAAGGCGGGATGCAGAACTGTGGATGTCACACCGTATGCTACCCGATTTCCTAAAGGAAAGAATTAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAAGAGGAGACATTAATTCGCAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGTCATCTTTGCTTAGATCTACTCAGAAAAGTGCCGATGTTTGAGAACATGGATAAACAGTTGTTGGATGCACTGTGTGATAGACTGAAGCCAGTCCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGACGAAATGCTCTTCATCATGCGTGGAAAACTTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGATCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCCTTGGATCCCAACTCCACCTCAAATCTACCCATCTCAACTAGAACAGTAGAAACCATATCAGAAGTCGAAGCCTTTGCTCTCTTGCCTGATGACTTGAAGTCTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAACTCCAACACACTTTCAGGTTCTATTCTGTGCAATGGAGGACATGGGGTGCATGTTTCATACAAGCAGCTTGGCGTAGATACCGAAAAAAGAAGGCTGAGAGGTCGTTACGTGAAGCAGAAGAAAGGATACAAGCAATGGAAAACGAGCAAGGGTCCTCACCCAGCTTTGCTGCCACCGTATATGCATCAAGGTTTGCATCAAGTGCATTGCGCCACTTGCGAAGTGGTAAACGCAACAGAGTGTCACAGCCACAGAGATTGCTGCCCCTGATGCCTCAGAAGCCATCTGAGCCAGATTTCACTGCTCAGAAAACCTAA 2085 0.4245 MTAKGQKFVRFKDWKSLSSSSIEHNDSTSDGFHKRKVQSSVSSVSDGSINTLSCKSNVLDPQGPTLQKWNKIFVITCVMAISVDPLFFYIPTIDDKKKCLDLDGTLNITASALRTFFDLFYVLHIIFQFRTGFIAPSSRVFGRGELVDDTSAIVMRYLSSYFIIDILSIIPLPQMVILAIIPFPKCSAPNVGKDLLKYTVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESRVRCWRRQLKNATIFNESYLSCGRDNNYTVQSLLSSSCPFTDPQSITDLETFNYGMFADALKSHVVDSTTDFHHKFFYCFWWGLRSVSSVGQGLQTSTYVGEIIFAIFIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLRKVPMFENMDKQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSEIKAGDFCGEELLTWALDPNSTSNLPISTRTVETISEVEAFALLPDDLKSVASQFRRLINSKQLQHTFRFYSVQWRTWGACFIQAAWRRYRKKKAERSLREAEERIQAMENEQGSSPSFAATVYASRFASSALRHLRSGKRNRVSQPQRLLPLMPQKPSEPDFTAQKT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2934 694 SUPERFAMILY Voltage-gated potassium channels 60 387 - -
Ssu4g2934 694 CDD CAP_ED 465 597 IPR000595 -
Ssu4g2934 694 MobiDBLite consensus disorder prediction 663 694 - -
Ssu4g2934 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 692 - -
Ssu4g2934 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 692 - -
Ssu4g2934 694 Pfam Cyclic nucleotide-binding domain 485 579 IPR000595 -
Ssu4g2934 694 ProSiteProfiles cAMP/cGMP binding motif profile. 465 549 IPR000595 -
Ssu4g2934 694 Coils Coil 618 638 - -
Ssu4g2934 694 SUPERFAMILY cAMP-binding domain-like 394 582 IPR018490 -
Ssu4g2934 694 Pfam Ion transport protein 69 393 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu4g2934 694 Gene3D Jelly Rolls 463 583 IPR014710 -
Ssu4g2934 694 Gene3D - 71 389 - -
Ssu4g2934 694 Gene3D Helix hairpin bin 392 456 - -
Ssu4g2934 694 SMART cnmp_10 465 596 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2934 Ssu-Chr4 74828555 74833364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2934 33 694 Ion Channels AT1G01340 63.487 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2934 K05391 - gmx:100795201 1228.77