Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2931 ATGAGCATTGCTGAAGGGAAAGAGATTGTTGTGTTTTTGGACTATGATGGAACACTCTCACCGATTGTAGATGACCCTGATCAAGCTTACATGGGTGATGTTATGCGCGCAGCTGTACGTGAAGTTGCTTATTGTTTTCCCACTGCCATTGTTAGTGGAAGGAGCAAGGATAAGGTATATGAATTTGTGAAGTTAAGGAATGTTTATTATGCTGGAAGTCATGGTATGGATATATCAACTCCATTAGgctcttcaaaatttgaagatcAGAAGCATCAGACAAGAGCTCTTGATGAAAAGGGTAATCATGTTGTTCACTTTCATCCGGCAAAAGAATTTTTGCCAACAATCCAAGAGATAGTtaaggttttgaaagaaaatacaacAAGAATAAAGGGATCTATGGTTGAGGATAATATGTTCTGTGTCAGCGTACACTACCGGCGTGTGAAAAATGAAGAGGATGTTGGTGTTCTCAAAGAAATGGTGGAGTCTATTATGAAAGCTTACCCCGATTTTTACatattagaaggaaaaaagGTTATGGAGATACGTCCAAATGTAAACTGGGACAAAGGTCATGCTCTTATGTATTTACTTGACACTCTTGGCTTTGACAACTTTAATGATGTTTTTCCAATGTACCTTGGGGATGATAGAACAGATGAAGATGCTTTTAAGGTTATAAGACACATTGGACGTGGTTTCCCCATTATTGTTTCTACAATTGCTAAAGAGACCGAGGCCTCATATTCCTTGCGTGACCCTGCTGATGTGCTGACTTTCTTGATTCGTTTAGCTAAATGGAAGAATAACCTATTACATAAAACTAGTGAAGGTGGTAGTGTTGATATGGAGGCAATGGTGGTAATGATGGCAATTGCAATAGCAGTAGTGGCAGCGGAAGTGATAATAATGGCAACAATGTTGGTTATGACAATGGTGACAATGGCAATGTGGGGGGCAATGGCGATTGCAATTGTATTGGAAGTAATGTTGGCCTATTGCAAAGTGGGAAAAGAAGAACCAATTGGTTCTTTGAAGAAGTCACGAGACGCGAGAGTTCAGGGGTTTGGAAGTGAGAGGACGTGCATCGTGACAGCGGCACAATGGTTGTCACATGACGGCACTGCTGGAGGTTCATATTTTGTCGTTGCAACGGAGGTGGCTGGCGAATCACTATGTCATCGTGATAGAAATCAGCACGATGGTGGCGCGAAAGGGGACAGTGATCTGAGCTTTTAG 1245 0.3992 MSIAEGKEIVVFLDYDGTLSPIVDDPDQAYMGDVMRAAVREVAYCFPTAIVSGRSKDKVYEFVKLRNVYYAGSHGMDISTPLGSSKFEDQKHQTRALDEKGNHVVHFHPAKEFLPTIQEIVKVLKENTTRIKGSMVEDNMFCVSVHYRRVKNEEDVGVLKEMVESIMKAYPDFYILEGKKVMEIRPNVNWDKGHALMYLLDTLGFDNFNDVFPMYLGDDRTDEDAFKVIRHIGRGFPIIVSTIAKETEASYSLRDPADVLTFLIRLAKWKNNLLHKTSEGGSVDMEAMVVMMAIAIAVVAAEVIIMATMLVMTMVTMAMWGAMAIAIVLEVMLAYCKVGKEEPIGSLKKSRDARVQGFGSERTCIVTAAQWLSHDGTAGGSYFVVATEVAGESLCHRDRNQHDGGAKGDSDLSF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2931 414 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 279 - -
Ssu4g2931 414 TIGRFAM T6PP: trehalose-phosphatase 7 267 IPR003337 GO:0003824|GO:0005992
Ssu4g2931 414 Gene3D - 11 253 IPR023214 -
Ssu4g2931 414 Pfam Trehalose-phosphatase 12 256 IPR003337 GO:0003824|GO:0005992
Ssu4g2931 414 SUPERFAMILY HAD-like 10 270 IPR036412 -
Ssu4g2931 414 CDD HAD_TPP 10 259 - -
Ssu4g2931 414 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 11 233 IPR006379 -
Ssu4g2931 414 Gene3D - 91 187 - -
Ssu4g2931 414 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 279 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2931 Ssu-Chr4 74730489 74736421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2931 11 263 Trehalose Biosynthesis Gene Families AT1G70290 25.094 9.25e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2931 K01087 - gmx:100799466 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2931 4 74730489 74736421 Ssu4g2931 4 74730489 74736421 ECH