Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2930 ATGCCTACAACAGCGCTGTTATCCCAATTGCGTCTTCTCCATCCCCTCCTCCCCATGAAGCCCCGCACTCTCCCTCTTCTCTCCAGaaccttcttcttcccttcctcCAAGTTCCTCCGAAACGCGCCATTTCGCGCCTTCTCCGCCCGGGCCTACGGCAGGGAGAAGCTTCTTCGCGCTCGCCCCTCCAAGAGCCTCGTCGACGACGAGGCCGACCTCAGCGACTGGGTCGACGAGTTGCGGACCGGCCAGCCCGACCGGTTAGGCCAGCGGTTCAGCCGCGGCGACGACGATGGCGGCGGCGAAGAACGCGAGTTCCGGCCGCGGAGGAATGATAGGGCTTCCGCGTTGGGGAAGAGGAGGGGCGGAGATTTGAGAAGGGGAAGAGACAGTGGCAATTGGAGGAGAAAGTTTCAACCGAGGagtaatgatgatgatgatggtaatGTTGATGTTGATGTGGCTGGAAGAAAATCTAAAGTTGGTGGGATTGGAGAGTTTCTTActgaagatgaagatgaggaTGAAGAGAGTGAAGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCCTTGTTTGGCCAACAAAACGGTTTGAACCGGAGGACCACTGAACCAACTCCAAGACCTTCCACTGGAGGATCTGATTCTTATTTAAGTGACACCAGATTTGACCAATGTTCAGTCTCCCTGCTGTCATTGAAAGGAATCAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGGAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTGGCAAAGTCACCTCCAAGTGATCGTGATCAAAGGCGGCCACCGATTCTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAgATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCAACTAGGTTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAAGTCTTATGTTTTCTGCCACCATTCCAGAAGAgGTGCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAGGAGGGTACTGAAGAGACACATTCACagGTTCACCAGACACATTTAGTTTCCCCCTTGGACAAGCATTTCTCTTTACTATATGTTCTTCTAAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTATCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCAGCTGATAGAGAACAATATATACATCGACTGGGCAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTACATACCGTAAAAGATTTGCCTATTGAGAAAGCTGCAGTACCTTCAGTTGATCCTGATACGAAGAAAAAGGTGGAAAAAGCTCTATCCCATGTGGAGATGAAGAATAAAGAAGTAGCATATCAGGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTAGAGCTAGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCCATTCCTAAGCTAGTCCTTGGCAAGATGGGCCTTAGGAATATCCCTGGTTTACGTGCCAAATAG 2079 0.4618 MPTTALLSQLRLLHPLLPMKPRTLPLLSRTFFFPSSKFLRNAPFRAFSARAYGREKLLRARPSKSLVDDEADLSDWVDELRTGQPDRLGQRFSRGDDDGGGEEREFRPRRNDRASALGKRRGGDLRRGRDSGNWRRKFQPRSNDDDDGNVDVDVAGRKSKVGGIGEFLTEDEDEDEESEGSEEEEILNKSRTALFGQQNGLNRRTTEPTPRPSTGGSDSYLSDTRFDQCSVSLLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPSDRDQRRPPILVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQSLMFSATIPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVHQTHLVSPLDKHFSLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLHTVKDLPIEKAAVPSVDPDTKKKVEKALSHVEMKNKEVAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2930 692 PANTHER RNA HELICASE 31 144 - -
Ssu4g2930 692 CDD SF2_C_DEAD 453 586 - -
Ssu4g2930 692 SMART ultradead3 243 456 IPR014001 -
Ssu4g2930 692 MobiDBLite consensus disorder prediction 84 154 - -
Ssu4g2930 692 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 224 252 IPR014014 GO:0003724
Ssu4g2930 692 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 31 144 - -
Ssu4g2930 692 Pfam DEAD/DEAH box helicase 249 426 IPR011545 GO:0003676|GO:0005524
Ssu4g2930 692 MobiDBLite consensus disorder prediction 191 222 - -
Ssu4g2930 692 Gene3D - 447 670 IPR027417 -
Ssu4g2930 692 MobiDBLite consensus disorder prediction 84 222 - -
Ssu4g2930 692 PANTHER RNA HELICASE 202 690 - -
Ssu4g2930 692 Gene3D - 173 439 IPR027417 -
Ssu4g2930 692 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 202 690 - -
Ssu4g2930 692 MobiDBLite consensus disorder prediction 168 183 - -
Ssu4g2930 692 SMART helicmild6 496 577 IPR001650 -
Ssu4g2930 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 593 IPR027417 -
Ssu4g2930 692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 472 623 IPR001650 -
Ssu4g2930 692 CDD DEADc_MSS116 231 440 - -
Ssu4g2930 692 Pfam Helicase conserved C-terminal domain 472 577 IPR001650 -
Ssu4g2930 692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 255 438 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2930 Ssu-Chr4 74715703 74721910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2930 224 605 Eukaryotic Initiation Factors Gene Family AT3G19760 27.136 2.87e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2930 - - gmx:100795739 1089.72