Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2921 ATGGGAGAGAATATGAAGTGTGAACAAGTTGGTCTCATTGATGAGCTAATGCAAGGGAAGGAGCTAGCAAAGCAGCTCAGTGACCATCTAgtctcatcatcatcaccatcgtCACCATCATCATCTCATGAAACAAATGAAGTCTTAATTGAGAAAATACTTTCCTCCTATGAGAAAGCACTGGCCATGCTGAATTGGAAGGCTAATAATGTAAGAGAAAGTAAGGCCAACAATGGCAGCACGATGGATTCCCATTGTTCTTTCACAAATGGTAGTTCCAAAAGTGATGTCATGGAGCCAGAGGTTAAGCACAAAGATGTTTTCAAGAAAAGAAAGACCATGCCAAGATGGACAGAGCAAGTGAAGGTGTGTTTGGGAACAGCACATGGTGGATCTCTGGATGATGGCTATAGCTGGAGAAAATATGGGCAGAAAGATATTCTTGGAGCTAAGTTTCCAagAGGATATTACAGATGCACATATAGACATGTACAAGGATGTCTGGCCACTAAACAAGTGCAAAAGTCAGATATAGACCCAATGATATGTGAGATAACCTACAAAGGAAGGCACACATGCACCCAAGCAAGTCACTTAAACAAGGCAGTAGCACCCCCATCAAAAACAAATATGGGCTTGGGAGAAAACAAGCAACACACCCATCAAAAGAATCAATcacaagaagagaaaatagaacCCCCAGAGacaattttctcttttgggTCAGGGCTTGAAGTTAAAATAGAGGATGTGGACAAGAAGGAGGACATATTCCCATCATTTTGCTTTTCTTCTCCATCCACAGGGTCTGAAAACGAGGACAACAACATATTCTCATACACTTTGGAGAACGATTTAATGGAAGGCTTCTCTCCTGCATTCATATCTCAAACAACTTCAGAATCAAACTTGTTCTGTTTGTCACCATGCCACTGGGGGAGCACTGGACTAGGCCAAAGTGTGCAAACTTCAGAGTCTGACATCACAGATATAGTTTCAGCCCCAACTTCAGACACCAATTCCCCAATAATGGACCTTGATTTCTTCCTTGATAAGATCGATTTCGACACAGATTTCCCTATCAACACCGCAGAACTTTGCACTTGA 1107 0.3975 MGENMKCEQVGLIDELMQGKELAKQLSDHLVSSSSPSSPSSSHETNEVLIEKILSSYEKALAMLNWKANNVRESKANNGSTMDSHCSFTNGSSKSDVMEPEVKHKDVFKKRKTMPRWTEQVKVCLGTAHGGSLDDGYSWRKYGQKDILGAKFPRGYYRCTYRHVQGCLATKQVQKSDIDPMICEITYKGRHTCTQASHLNKAVAPPSKTNMGLGENKQHTHQKNQSQEEKIEPPETIFSFGSGLEVKIEDVDKKEDIFPSFCFSSPSTGSENEDNNIFSYTLENDLMEGFSPAFISQTTSESNLFCLSPCHWGSTGLGQSVQTSESDITDIVSAPTSDTNSPIMDLDFFLDKIDFDTDFPINTAELCT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2921 368 MobiDBLite consensus disorder prediction 77 101 - -
Ssu4g2921 368 SUPERFAMILY WRKY DNA-binding domain 132 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g2921 368 MobiDBLite consensus disorder prediction 27 46 - -
Ssu4g2921 368 MobiDBLite consensus disorder prediction 77 96 - -
Ssu4g2921 368 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 362 IPR044810 GO:0003700
Ssu4g2921 368 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g2921 368 Gene3D WRKY domain 121 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g2921 368 ProSiteProfiles WRKY domain profile. 128 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g2921 368 Pfam WRKY DNA -binding domain 134 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g2921 368 MobiDBLite consensus disorder prediction 204 232 - -
Ssu4g2921 368 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2921 Ssu-Chr4 74551597 74553684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2921 3 199 WRKY Transcription Factor Family AT5G24110 45.000 5.25e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g2921 WRKY 5.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2921 - - aprc:113849885 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2921 4 74551597 74553684 Ssu2g2936 2 90739366 90740947 ECH
Ssu4g2921 4 74551597 74553684 Ssu4g2921 4 74551597 74553684 ECH
Ssu4g2921 4 74551597 74553684 Ssu4g0144 4 2422086 2424132 ECH
Ssu2g2936 2 90739366 90740947 Ssu4g2921 4 74551597 74553684 ECH
Ssu4g0144 4 2422086 2424132 Ssu4g2921 4 74551597 74553684 PCT