Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2914 ATGACTACTGCAAATGGTGGGACTGGGACTGAGGAGCACAAGAGAAAAACTAATGACCCTTTCCTGAAGCCAGGGGGACACCAAAACATGCCAAGATCACCTAGATTGTGCACACCTATTCGGAAGGAATGGCCAGAAAATTTGCCAAATGACAATGTGATTGGTAAAGAGGATAATGGTTTGAATAGATATGTTACTTCCTTAGCTGGATCTGGACTTCCTAGTACTAGTTTTTGTTCCACAACAGATTCTGAACACATTGTTGAAGAGTTACCTGTTAGGAATTATAAGAACCAGGATATAGATCTAGTTGGCTACCCACATAATTCAAGACATCCTCAGAGGAATCAATTGACTATTGAGTCTAAGTATAATAGCTTGAGTAGAGAAATTATCCCCAAGGTTGAGGAGCAGATACCACTCAGATTAAGCAAAGGACTAAAGGGAATTGGTTCTGAATTTTGGGGGCTGAAGTCTCTGCCTGGCAAGAGTGTAAATCATGACCCATTGAAAGTCTCAGCAGATATAAGCAATATGGAGAAGGCTATCATCTCAAACAATACACATCTTATTAGCAGTATAACTCAGAGCACTTTATCTGCATATAATTATCCTCAATTGACTGTAAATGAAATAAGGAAGGGAAAGGGGGTTATTTGCAAAGATTTGGACAAAAGCTTCAGTATCGGTGGAGCACTTAAGAGCCAGGAGGATGAGAAACCTGCTTTTGCAGCTAAGTTTCAATCTGATACACTGCTGAGATCAAATGTTGATGATAATAAGCCTTTATTGGAAAGAACTGACATGTCTGGTAGCAATGGACTCAACTTAAGAGAGTGGCTGAAATCTGAAGGTCATAAAATGAAGAAATCAGAAAGGCTTCATATATTTAAGAAGGTATtggaattgattgattttgCACACTCACAAGAACTTGTCTTGCTAGACTTTCAACCATCTTGTTTCACCTTGTTGCCTTCAAGTAAGATTAAATACATTGGTTCATATGGCCAACAAGGGTTGGATGATGAAGTCATGACCTGCAATGTGACTAGGAAAAGGCCTGTGGAACATGATACCTGTGCTTGCCAAAGTTTGAGTATGAAGCAGCAAAAGCTCTATGAGGAGACAGGATCTTTTAGGCAGCAGCATCACTTCACCTGCATTCATGGTAGCAGGACCGCAATGAATCAAACTGAATCTGACACAAACAGACCCATGGAATCAAGGAGTAAAGAAATTATGTGCCAAAATAGTTCTAGTTCTCCACGTACTTGTACTGAAGAAAAGCAGTTAATGTCAGTAACCATTCAGTTAGAAGAGAAGTGGTATTGTAGTCCAGAAGTGCTCAATGATGGAGTTTGCACATTATCATCAAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGTTGCTGTGCAATATTGAGTCATGGGAGGCGCATTCAACTGTGATGTTGAATTTGTGTCATAGAATCTTACCGTCTAAATTTCTAGCGGAAAATCCAAAGGAAGCTggtttttgtctttggcttctgCATCCCGAACCTTCTTCCCGCCCCACTGCCAGGATGATTTTAGAATCTGAATTAATATGTGAATCAGAGGAATCAAATTCTGTAGATGATGTTGGAATATCTGATGATGAGGCTGAAACAGAGCAATTACTACATTTTCTAATTACActcaaagaagaaaagaaaaaccagGCAGCCAAGTTGGAAGAAGAGCTAAATTTCTTGAATGAAGATAttaaagagatagaaagaagtTATCCATTTGGGACAGATTCAGTATTTCCTTTGGCACAAATGAACAGTCCTGAATTGAGAGGAAGCAGTTTACATTTTCAAGATTCTTCCAGTTCAGACATTAGTAGATCTATGCGAAGGTCATTTGTTGAAGAAGAAAGATTTTTGAGTAATGTAAATCAGCTGGAGAATTCTTACTTTTCCACGAGAGTCCGAGTCCTGCCAAAAGAAGCCTCATCTGTTTCAATTTCAAGCAATGATAAAAATGTGATGGAAAGTAGATGGAGGTTGCCTTATGTAGAGAATGTTAATAAGGAGCCTAGAAGAGTTCAGAGTTCTGTTGGTGGTCTAGGATCCTTCTTTGAAGGTTTATGCAAGTTCGCTCGTTACAGCAAGTTTGAAGAGTGTGGCAGATTAAGAAATAGAGATCTGCTTAGTTCTGCCAATGTGATGTGTGCTTTAAGTTTTGACCGCGATGAGGATTACATTGCAGCAGGAGGAGtttcaaagaaaattaagatttttgacCTCAATGCTATTTCAAGCGATTCTATTGACATCCAGTACCCGGTAGTTGAGATGTCAAATAAATCAAAGCTTAGTTGTGTGTGCTGGAACtcttacataaaaaatcatCTGGCTTCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGATACTGGTCAGCCATTGTCCCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCTGACCCAAAAATGTTTGCAAGTGGAAGTGATGACTGCTCTGTCAAACTATGGAATATCAGCGAGAGAAATTCTCTGGGAACCATCAGGAACCGTGCCAATATATGCTGTGTTCAGTTCTCTCCTTCATCaacaaatcttttattttttggatcagCTGATCACAAGATTTATGGTTATGATCTTCGTCACACAAGAATCCCTTGGTGCACATTAGCTGGTCATGGCAAAGCTGTTAGCtatgtaaaatttatagatGCTGAGGCAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAACCAGCTCTTCTGGTTTGTCATCTGATGCTTGTGTCTTAACCTTTCAAGGtcatagaaataaaaagAATTTCGTGGGATTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAgGTGTACTGTTATCACAAATCACTGCCAGTGCCAATTGCTACTCATAAATTTGAGTCAATTGATCCCATTTCTGGTCATCTTAATAGTGATGATAATAATGGGCAGTTTGTTACTAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGCTGCTGCGAACTCAGTTGGAATTGTGAAACTATTGCAGATGGTCTga 3138 0.3773 MTTANGGTGTEEHKRKTNDPFLKPGGHQNMPRSPRLCTPIRKEWPENLPNDNVIGKEDNGLNRYVTSLAGSGLPSTSFCSTTDSEHIVEELPVRNYKNQDIDLVGYPHNSRHPQRNQLTIESKYNSLSREIIPKVEEQIPLRLSKGLKGIGSEFWGLKSLPGKSVNHDPLKVSADISNMEKAIISNNTHLISSITQSTLSAYNYPQLTVNEIRKGKGVICKDLDKSFSIGGALKSQEDEKPAFAAKFQSDTLLRSNVDDNKPLLERTDMSGSNGLNLREWLKSEGHKMKKSERLHIFKKVLELIDFAHSQELVLLDFQPSCFTLLPSSKIKYIGSYGQQGLDDEVMTCNVTRKRPVEHDTCACQSLSMKQQKLYEETGSFRQQHHFTCIHGSRTAMNQTESDTNRPMESRSKEIMCQNSSSSPRTCTEEKQLMSVTIQLEEKWYCSPEVLNDGVCTLSSNIYSLGVLLFELLCNIESWEAHSTVMLNLCHRILPSKFLAENPKEAGFCLWLLHPEPSSRPTARMILESELICESEESNSVDDVGISDDEAETEQLLHFLITLKEEKKNQAAKLEEELNFLNEDIKEIERSYPFGTDSVFPLAQMNSPELRGSSLHFQDSSSSDISRSMRRSFVEEERFLSNVNQLENSYFSTRVRVLPKEASSVSISSNDKNVMESRWRLPYVENVNKEPRRVQSSVGGLGSFFEGLCKFARYSKFEECGRLRNRDLLSSANVMCALSFDRDEDYIAAGGVSKKIKIFDLNAISSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNISERNSLGTIRNRANICCVQFSPSSTNLLFFGSADHKIYGYDLRHTRIPWCTLAGHGKAVSYVKFIDAEAVVSASTDNSLKLWDLKKTSSSGLSSDACVLTFQGHRNKKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIATHKFESIDPISGHLNSDDNNGQFVTSVCWRKKSNMLAAANSVGIVKLLQMV 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2914 1045 ProSitePatterns Trp-Asp (WD) repeats signature. 796 810 IPR019775 -
Ssu4g2914 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 818 IPR001680 GO:0005515
Ssu4g2914 1045 ProSitePatterns Trp-Asp (WD) repeats signature. 923 937 IPR019775 -
Ssu4g2914 1045 SMART WD40_4 947 986 IPR001680 GO:0005515
Ssu4g2914 1045 SMART WD40_4 770 809 IPR001680 GO:0005515
Ssu4g2914 1045 SMART WD40_4 997 1043 IPR001680 GO:0005515
Ssu4g2914 1045 SMART WD40_4 898 936 IPR001680 GO:0005515
Ssu4g2914 1045 SMART WD40_4 724 759 IPR001680 GO:0005515
Ssu4g2914 1045 SMART WD40_4 855 894 IPR001680 GO:0005515
Ssu4g2914 1045 SMART WD40_4 812 852 IPR001680 GO:0005515
Ssu4g2914 1045 MobiDBLite consensus disorder prediction 1 37 - -
Ssu4g2914 1045 ProSiteProfiles Protein kinase domain profile. 144 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2914 1045 PANTHER PROTEIN SPA1-RELATED 2 1 1045 IPR044630 GO:0009640
Ssu4g2914 1045 Pfam Protein kinase domain 438 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2914 1045 SUPERFAMILY WD40 repeat-like 733 1042 IPR036322 GO:0005515
Ssu4g2914 1045 SMART serkin_6 193 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2914 1045 Coils Coil 556 590 - -
Ssu4g2914 1045 Pfam WD domain, G-beta repeat 814 852 IPR001680 GO:0005515
Ssu4g2914 1045 PANTHER LIGASE COP1, PUTATIVE-RELATED 1 1045 - -
Ssu4g2914 1045 SUPERFAMILY Protein kinase-like (PK-like) 273 529 IPR011009 -
Ssu4g2914 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 905 945 IPR001680 GO:0005515
Ssu4g2914 1045 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 905 938 - -
Ssu4g2914 1045 Gene3D - 703 1045 IPR015943 GO:0005515
Ssu4g2914 1045 Gene3D Transferase(Phosphotransferase) domain 1 273 542 - -
Ssu4g2914 1045 PRINTS G protein beta WD-40 repeat signature 923 937 IPR020472 -
Ssu4g2914 1045 PRINTS G protein beta WD-40 repeat signature 839 853 IPR020472 -
Ssu4g2914 1045 PRINTS G protein beta WD-40 repeat signature 796 810 IPR020472 -
Ssu4g2914 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 819 861 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2914 Ssu-Chr4 74381705 74410351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2914 796 938 Miscellaneous Gene Families AT5G08390 22.759 7.65e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Ssu4g2914 Pkinase 5.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2914 K16240 - gmx:100799267 1743.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2914 4 74381705 74410351 Ssu4g2914 4 74381705 74410351 ECH