Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2913 ATGGAACAATTTAGACAGATTGGGGAGGCACTTGGGGGTTTGAAATCTGTGATGGTATTCCGGGAGAGCATTCAAATCAATCAGAGGCAATGTTGTTTGCTTCTTGATGTGTTCAGCTTTGCATATGAGTGTATTGCAGATGAGATTATACAGAACCTGAAATTTGAAGAGAAGAATGGGAAGTGGAAGGTTCTAGAACAGCCCTTGAGAGAGATCCATAGGATTTTCAGAGAAGGAGAAGCTTACATTAGGCATTGCATGGAAACAAAGGACTGGTGGGCTAAGGCCATTACCTTGTGCCACAACACAGACTGTGTTGAGTTTCATATACACAACTTGCTTTGTTGCATGCCTGTTGTAATTGAAGCTATTGAGTCTGCAGGAGAAACATCAGGGTGGGATCAGGATGAGATGCAAAGGAAGAGGCTCATCAACTCCAACAAGTACAGGAAAGAATATAGAGACATGAAACTTTTCCAGTGGAAATTTGGGAAGCAGTACCTCATTACTCAGGGCTTCTGCAACCGGTATGAAATGGTTTGGAAGGAAGACAGATGGTTCCTTTACAACAAAATCCATGAAAAGAAAGTGGCAGGTATAACAAAGTATGAGAAGAAATTGATAGATTTGCTTTTGAGCAATTTGGAAAGATCAGAATTACTGGAAAGGAGGCTCCTGCCAAGCTCAATATTGGTTGGATCTAAGGACTACCAGGTGAGAAGAAGAATGGGGAATGGGAGTCAGTACAAGGAGATTTCATGGTTAGGTGAAAGCTTTGTCATAAGACATTTTTCTGGGGACATTGAAGCTTTGAAACCTGAGATCAGAgaacttttatctctttcccATCCAAATATAATGGACTTCCTTTGTGGTTTTACTGATGAGGAGAAGAAGGAATGCTTTTTGTTAATGGAACTGATGAGCAAAACCCTTTCCACCCACATCAAAGAGATTCATGGTCCACGGAAGCGAATACCGTTCTTGCTTCATGTGGCAGTTGATATTATGCTCCAGATTGCCAGGGGAATGGAGTATATGCATTCAAAGAAAGTATATCATGGAGAACTAAACCCTTCAAACATTCTTGTTAAGCCTAGAGGTACCTCCCCAGAAGGTTACTTGCATGCCAAGGTAACGGGGTTTGGCCTATCTTCTGTCAAGGACTTGAACCAGAAAGGGAACACAAACACAAATCAGAATGGAACTCTCCCATTCATCTGGTACTCTCCTGAAGTGCTTGAAGTGCAAGAGCAATCAAGAGGTGCAGCAAATTCCAAGCACACCGAGAAATCTGATGTGTACAGTTTTGGAATGGTTTGCTTTGAGCTTCTAACTGGCAAAGTCCCTTTTGAAGATAGTCATCTTCAAGGGGAGAAAATGAGCAGAAACATAAGGGCAGGAGAGAGGCCACTTTTCCCACTCAATTCTCCCAAATATGTTATTAACTTGACAAAGAGATGTTGGCATATTGACCCAAATCAACGTCCAAGCTTCTCTACCATATGTAGAGTTCTTcgttatataaaaagatttctTGCAATGAATCCTGGTTACAGTAGTCAGCCAGAACCACCAGTGCCACCTGTAGATTACTGTGATATAGAGTCAGTGCTTCTGAGGAAGTTTCCTTCTTGGGGAAGTTCTGAATCATCACCGGTATCAATAATTCCATTTCAAATGTTTGCCTATCAAGTTATAGAGCGAGAAAAAATGAGTACATGCTTTAAGGAGAACTCTGAGTCTGGAAGTGATGCTTCAGCCTGTGGCGATGAACTTGTTACTTCTGGGGATGAACCATTTCCATCCTCAGCTGAAAGGAAGTCTTTGCTTGGACATGATATTATGAACAGAAGGATTACATTGACCAGGAAATCTCTTGATTTGAAGCACACCAAACAACCAGGTACACCGAAAGGGAGATCAGCCAGACCTCCACAAATGTACCCTCGTGCACGAAGTCTGAGGATTACTTCAGAGAACCACGAAATATCAAGTCCAAGGACAATAAGAAGAGTATCTTCTGGTCATGTCTCAGACTCTGAGCTTTCTTAG 2055 0.4131 MEQFRQIGEALGGLKSVMVFRESIQINQRQCCLLLDVFSFAYECIADEIIQNLKFEEKNGKWKVLEQPLREIHRIFREGEAYIRHCMETKDWWAKAITLCHNTDCVEFHIHNLLCCMPVVIEAIESAGETSGWDQDEMQRKRLINSNKYRKEYRDMKLFQWKFGKQYLITQGFCNRYEMVWKEDRWFLYNKIHEKKVAGITKYEKKLIDLLLSNLERSELLERRLLPSSILVGSKDYQVRRRMGNGSQYKEISWLGESFVIRHFSGDIEALKPEIRELLSLSHPNIMDFLCGFTDEEKKECFLLMELMSKTLSTHIKEIHGPRKRIPFLLHVAVDIMLQIARGMEYMHSKKVYHGELNPSNILVKPRGTSPEGYLHAKVTGFGLSSVKDLNQKGNTNTNQNGTLPFIWYSPEVLEVQEQSRGAANSKHTEKSDVYSFGMVCFELLTGKVPFEDSHLQGEKMSRNIRAGERPLFPLNSPKYVINLTKRCWHIDPNQRPSFSTICRVLRYIKRFLAMNPGYSSQPEPPVPPVDYCDIESVLLRKFPSWGSSESSPVSIIPFQMFAYQVIEREKMSTCFKENSESGSDASACGDELVTSGDEPFPSSAERKSLLGHDIMNRRITLTRKSLDLKHTKQPGTPKGRSARPPQMYPRARSLRITSENHEISSPRTIRRVSSGHVSDSELS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2913 684 ProSiteProfiles Protein kinase domain profile. 237 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2913 684 PANTHER SERINE-THREONINE PROTEIN KINASE 1 639 - -
Ssu4g2913 684 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-LIKE 1 639 - -
Ssu4g2913 684 MobiDBLite consensus disorder prediction 578 604 - -
Ssu4g2913 684 MobiDBLite consensus disorder prediction 623 684 - -
Ssu4g2913 684 MobiDBLite consensus disorder prediction 659 684 - -
Ssu4g2913 684 Pfam Protein tyrosine and serine/threonine kinase 269 505 IPR001245 GO:0004672|GO:0006468
Ssu4g2913 684 Gene3D Transferase(Phosphotransferase) domain 1 236 516 - -
Ssu4g2913 684 SUPERFAMILY Protein kinase-like (PK-like) 225 515 IPR011009 -
Ssu4g2913 684 Pfam Protein of unknown function (DUF1221) 21 234 IPR010632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2913 Ssu-Chr4 74377303 74380570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2913 274 506 MAP Kinase Kinase Kinase AT5G58950 29.661 1.58e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Ssu4g2913 PK_Tyr_Ser-Thr 7.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2913 - - gmx:100813704 1214.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2913 4 74377303 74380570 Ssu4g2913 4 74377303 74380570 ECH