LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g2911	ATGAGAGAGAGCAAGCAGCACAGCACAATGTGCTCCAGCTGCATCTCCCCCCTCACACTCACACTCTTCCTCCTCATTGCCCCACTCCTCCCCTCCACCTCTCCCAAACCCACCCACAGAAGAATCCTCCACCAACCCTTCCTCTCCCAGGGAGGCTCCCCACCTCCCTCCCAACCACCCAAaccctctccctctccctctccctctccacCCTCTCCATCATCCCCAAACCCAAAGTACCCATTTTCCACCACACCCAACACCAATGCCTCCACACCCTTCTTCCCCACATACCCCTCCCCTCCACCTCCACCTTCCCCCTCAGCCTTTGCCTCCTTCCCCGCCAACATCTCCTCCCTCATCCTCCCACAGTCCCCCAAGTCTAAGTCTTCCTCCAAAAAACTCCTCGCCGTCGCCATCGCCGCCGTCGCCTGCGCCGCCGCTGTCGTCGCCCTCTCCGCCTTCGTCTACTGCCGCCGCCGACGCAAACACTACTCCGCCGACGATAAAACCCTCAGATCCGACAGCAGCATCCGCCTCTTCCCCCGTGAACCGGCCGCCGGCGCCGCCCGGAAAGCCAGAAACACTTCCTCCACCAGCTCCGAGTTTCTCTACCTCGGCACCATTGTCGACTCCCGCGGCGGCGTCGACGAGCTCTCCGACCCACGCGCCTCCGCGATGAACCCCCGGAAAATGGACTCGCCCGAGCTCCAGCCCCTGCCGCCGCTGGCGAGACAGGCCTCGAGGCTTCGCGAGGATGCCACGGCGGGGGCGGCGGAGGACGATGAGGAAGAGTTCTACTCGCCGAGAGGGTCGTTGAACGGAAGAGAAGGCTCCGCGGGAACTGGATCGGGTTCCCGGCGAGTTTTCTCGGCCATTGCCGGAGAAAATTTGGTTGGCCGTAGCAACAGCGAATCCACcacttcttctttctcttcttcctcttctgcCTCCCCGGATCGCTCTCATTCCATTAGCCTCTCGCCGCCGGTGAGCGTAAGCCCCAGAAGATCGCAACCCAAGTCTCCGGAAAATACTATAACCCACCATTCTCCGCCGCCGCCGGCGTCGGCGGTGGAGGCGTCCCCGTCCTCGTCCACGCTCTCGTCGCCGTCGCCGGTTTTCGGCCAGAACGTGCCTTCGTCGTCAATGTCGTCGACGCCGGAGCGGAGGGAGTGCCAGTCGCCGTCGCTGTCGCCGCTCTCTCTGTCGCCGAAGAAGAACCCAGATGGGGAATCAGTCCCAGGACTTGTTAAACTTGAAAAGGCGCAGTCTTTTGGTTCATCGAAGGAGAAAAACGAAGGTGGGTCACCGAGATTGTCGAACGCTTCTTCCGTTGGGAAGTCCTCGGCGTTTTCTCTGCCGTCGCCGGAAGAAGGGATGAACTTGCAACATGGGTTGGATCAGTCTCCGACCATATCCGACGTCTCAGATCGGTACCGGCATTCTCCTCTTTCATCACTGCATTTATCGCCGACACTGCTTTCGTCGCCGGAGAGAGAGTTGAACCCTCAGCCACCACCACCTTCTCGGAAGCACTGGGAGATTCCTGACTTGTTGACGCCAATCGGTGAATCACCGAATTTTTCAGCTCCACAGAGGAAACAGTGGGAAATTCCGGTTATTTCAGCACCAATTGGTCCATCTAGTAGTGTTTTAGCCCCTCCTCCGCCGCCTCCacctccgccgccgccgcctCCACCAGTGCTGCGGCAGCGGAAGCAGTGGGAAGTGCCGTCTCCGGTGACGCCGGTGGGTCAACCGGTTTCGAGGCCGCCGGCGCTGACGCCTCCTTCTAGGCCTTTTGTGTTGCAAACCCCAAATACAAAGGTTTCTCCCGTTGAGTTGCCACCTGCTAGTTCTCAGAATTTTGAGGAGAGTTCTGAGGAGACATCTAAACCTAAGTTGAAGCCTTTGCATTGGGACAAAGTTAGGGCCAGTTCTGATCGTGAGATGGTGTGGGATCAGTTGAGGTCTAGCTCTTTTAAGTTGAATGAGGAGATGATTGAAACTTTGTTTGTAGTGAACACACCAAACCCAAAACCCAAGGATACTACTCCTCGCTCAGTTCTTGCCCCGCAAAATCAGGAGGATAGGGTGCTGGATCCTAAAAAGTCCCAAAACATTGCTATATTGTTAAGAGCACTTAATGTGACCATAGAAGAAGTGTGTGAATCACTGTTAGAAGGTATTACCGATACACTTGGAACTGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAGGAAGAACGCAAATTGAAGGAACATAAAGATGATTCTCCAACCAAGCTTGGTCCTGCTGAGAAATTTTTGAAGGCAGTAATTGATGTTCCTTTCGCATTTAAAAGGGTGGAAGCAATGCTTTACATAGCCAATTTTGAGTCGGAAGTGGAGTATCTTAGGAAATCCTTTCAAACTTTAGAGGcaatcatcaatcatcattcTTTTCCACTGATTTATTTATTCCCTCTCCCATTATTCCTCTATGTCTCTCTCTTCCCTTTTTCCCTCATATATTCTCTTGTAGTGGAGGCCAAGCAGAATCTGGTACTGATGTCCATACATGGTTCTCAGGAGGTTTCTCTTTGTACATGTCATGAGTTCTAG	2616	0.5264	MRESKQHSTMCSSCISPLTLTLFLLIAPLLPSTSPKPTHRRILHQPFLSQGGSPPPSQPPKPSPSPSPSPPSPSSPNPKYPFSTTPNTNASTPFFPTYPSPPPPPSPSAFASFPANISSLILPQSPKSKSSSKKLLAVAIAAVACAAAVVALSAFVYCRRRRKHYSADDKTLRSDSSIRLFPREPAAGAARKARNTSSTSSEFLYLGTIVDSRGGVDELSDPRASAMNPRKMDSPELQPLPPLARQASRLREDATAGAAEDDEEEFYSPRGSLNGREGSAGTGSGSRRVFSAIAGENLVGRSNSESTTSSFSSSSSASPDRSHSISLSPPVSVSPRRSQPKSPENTITHHSPPPPASAVEASPSSSTLSSPSPVFGQNVPSSSMSSTPERRECQSPSLSPLSLSPKKNPDGESVPGLVKLEKAQSFGSSKEKNEGGSPRLSNASSVGKSSAFSLPSPEEGMNLQHGLDQSPTISDVSDRYRHSPLSSLHLSPTLLSSPERELNPQPPPPSRKHWEIPDLLTPIGESPNFSAPQRKQWEIPVISAPIGPSSSVLAPPPPPPPPPPPPPPVLRQRKQWEVPSPVTPVGQPVSRPPALTPPSRPFVLQTPNTKVSPVELPPASSQNFEESSEETSKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPNPKPKDTTPRSVLAPQNQEDRVLDPKKSQNIAILLRALNVTIEEVCESLLEGITDTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVIDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLEAIINHHSFPLIYLFPLPLFLYVSLFPFSLIYSLVVEAKQNLVLMSIHGSQEVSLCTCHEF	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g2911	871	Gene3D	Formin, FH2 domain	620	819	IPR042201	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	585	600	-	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	52	80	-	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	216	635	-	-
	Ssu4g2911	871	Pfam	Formin Homology 2 Domain	628	814	IPR015425	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	46	86	-	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	550	572	-	-
	Ssu4g2911	871	PANTHER	FORMIN-RELATED	21	812	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Ssu4g2911	871	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	626	871	IPR015425	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	360	406	-	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	429	500	-	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	601	627	-	-
	Ssu4g2911	871	MobiDBLite	consensus disorder prediction	297	346	-	-
	Ssu4g2911	871	SMART	it6_source	626	871	IPR015425	-
	Ssu4g2911	871	PANTHER	FORMIN-LIKE PROTEIN 1	21	812	-	-
	Ssu4g2911	871	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	557	815	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g2911	Ssu-Chr4	74355655	74359283	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g2911	576	812	FH2 protein (formin) Gene Family	AT3G25500	72.199	2.57e-101	337

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g2911	-		-	gmx:100802678	1102.81