Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2907 ATGGGGTTGGTCATACAGCTTCTGTCGGCGAGGCTCGGAGTGGCCACCGGGCGCCACCTGGCGGAGCTGTGCAGGGAGGAGTACTCCAATTGGGCCAGGCTGGTGCTGTGGATCTTGGCTGAGCTGGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCTATTGCTTTGAAGATTCTTAGCCATGGGGTTCTCCCCATTTGGGCTGGTGTGGTTATCACAGCCATGGATTGtttcttctttctatttctcgAGAACTATGGAGTGAGGAAGTTGGAAGGTGTTTTCGCAGTTTTCATTGGAACTATGGGCTTTTCTTTTGCATGGATGTTCTTTGATACAAATCCCAGTGAAGAAGAACTAATGATGGGTCTTTTGATCCCAAAAGTTAGTTCAAAAACACTTCGTCAGGCTGTGGAAATTGTGGGGTGTGTCATAACCCCACATAATGTATTCCTCCATTCTGCATTAGTACAATCAAGGGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTCTCAACTACTACTCAATTGAGTCCTCAGTTGCACTTTTAATCACATTGGTGATCAATCTATTTGTGATAACTGTTTTCGCTAGGGTGTTCTACGGTACAGAACAGGCCAATGGCATAGGATTGGTCAATGCAGGGCAATACCTTCAGGAGAGGTACGGAGGAGGGTTCTTTCCAATTCTCTATATATGGGGTATTGGTCTATTAGCAGCTGGCCAAAGTAGTACCATCACTGGCACATATGCGGGGCAGTTTATAACAGAGGGTTTTCTTAAGCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTCGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCCATTGTTTTTAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGGTCCAAGCAATACAGATTCCTTTTGCACTTATCCCCCTTCTGACTTTGGTGTCCAAAGAGGAAGTGATGGGTACCTTCAGAATAGGGACTATAGTGGAGAGAGTGGCTTGGATTGTGGCTATGCTGGTAATAATGGTTTATGGATATATGCTATTAGATTTCTTCCTCGTTGAAGTGGATGGACTGTTGTTTGGTTTTCTAGTCTTCCTTGGCGCTGCAGCATggatttcatttattatatatctggTTCAACATAGTGGTGCCATTCCTTCAATCCTAGTGAGGTCCCCTAATTCCAAAGGCTTTTTCTCTCTTGCTGAGAACTAA 1257 0.4304 MGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAELALIAADIQEVIGSAIALKILSHGVLPIWAGVVITAMDCFFFLFLENYGVRKLEGVFAVFIGTMGFSFAWMFFDTNPSEEELMMGLLIPKVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSVALLITLVINLFVITVFARVFYGTEQANGIGLVNAGQYLQERYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIVFNTSEGSLDTLNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGTIVERVAWIVAMLVIMVYGYMLLDFFLVEVDGLLFGFLVFLGAAAWISFIIYLVQHSGAIPSILVRSPNSKGFFSLAEN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2907 418 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 1 418 - -
Ssu4g2907 418 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 1 333 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 Pfam Natural resistance-associated macrophage protein 1 339 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PRINTS Natural resistance-associated macrophage protein signature 66 85 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PRINTS Natural resistance-associated macrophage protein signature 36 62 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PRINTS Natural resistance-associated macrophage protein signature 247 266 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PRINTS Natural resistance-associated macrophage protein signature 91 112 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PRINTS Natural resistance-associated macrophage protein signature 309 328 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PRINTS Natural resistance-associated macrophage protein signature 140 163 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g2907 418 PRINTS Natural resistance-associated macrophage protein signature 275 292 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2907 Ssu-Chr4 74251876 74255049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2907 1 396 Inorganic Solute Cotransporters AT1G47240 75.253 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2907 K21398 - gmx:100801411 743.806