Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2897 ATGGTGTTTGTCAAGGCTCACAAAACAAAAGCCTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAgAGGGGAAAACCGATTACCGAGCCAGGATTCGGTTAATTAATCAGGATAAAAACAAGTACAACACACCAAAGTACCGCTTTGTGGTTCGATTTAGCAACAAGGACATCACTGCCCAAATAATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCAGCATCATATGCCCATGAGCTTCCACGTTATGGTCTTGAAGTAGGCCTTACAAACTATGCTGCAGCTTATTGCACTGGACTCTTGTTGGCCCGTCGAGTGCTTAAAATGCTTGAAATGGATGAGGAGTATGAGGGAAATGTTGAGGCTACTGGAGAGGATTTTTCAGTGGAACCTGCTGAGAGCAGAAGGCCATTCCGTGCTCTCCTTGATGTAGGTCTTATTAGGACTACAACTGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGAGGTTTGGATATTCCTCACAGTGACAAGAGGTTTTCTGGctttgaaaaggagaaaaaggagCTTGATCCTGAGGTTCATCGCAAGTATATCTTTGGTGGACATGTCGCTTCCTATATGAAGATGTTGATGGAAGATGAACCAGAGAAGTACCAGTCACACTTCAGTGAATATATCAAGCGTGGAGTAGAGCCTGATGGTCTGGAGGAGCTGTACAAGAAGGTTCATGCTGCCATCCGTGCAGATCCTACTGTCAAGAAATCTGAGAAACAGCTGCCTAAGGAGCATAAGAGGTACAACCTCAAGAAGCTTACTTATGAGGAGAGAAAGGCTAAGTTGATTGCTCACTTGGAGGCTCTCAACTCTGCTGCTGACGgtcatgatgatgatgagtgA 897 0.4281 MVFVKAHKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDITAQIISASIAGDIVLAASYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPAESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFSGFEKEKKELDPEVHRKYIFGGHVASYMKMLMEDEPEKYQSHFSEYIKRGVEPDGLEELYKKVHAAIRADPTVKKSEKQLPKEHKRYNLKKLTYEERKAKLIAHLEALNSAADGHDDDE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2897 298 PANTHER - 1 297 - -
Ssu4g2897 298 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 SUPERFAMILY Translational machinery components 11 252 - -
Ssu4g2897 298 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 CDD Ribosomal_L18_L5e 41 170 - -
Ssu4g2897 298 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 297 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu4g2897 298 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Ssu4g2897 298 Gene3D - 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2897 Ssu-Chr4 73992406 73994562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2897 1 291 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.474 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2897 K02932 - gmx:100818819 540.036