Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2893 ATGGGAAACAGTGAGGAAGGGAAATCTATTAAGACTGGAAGTCCTTCTTCACCTGCAACAACTGATCAGACCAACCAGCCTAACATTCATGTCTATACTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACATTCCACCGTACTTCAACTCAGCTGTGGCTTCTGGTCATGCTCCACACCCATACATGTGGGGGCCGCCACAGCCTATGATGCCACCTTATGGGCCACCTTATGCTGCATTTTATCCGCATGGAGGGGTTTATACTCACCCTGCAGTTGCTATTGGGCCACATTCACATGGTCAAGGAGTTCCATCTTCACCTGCTGCTGGGACTCCTTCAAGCGTAGAATCACCAACCAAATTGTCTGGAAATACTGATCAGggtttaatgaaaaaattgaaagggtTTGATGGGCTTGCGATGTCGATAGGCAATTGCAATGCCGAGAGTGTTGAGCGTGGAGCTGAAAACAGGCTGTCACAGAGTGTGGATACTGAGGGTTCCAGCGATGGAAGTGATGGCAACACTGCAGGGGCTAatcaaacaaaaaggaaaagaagccGAGAGGGAACGCCAACCACTGATGGAGAAGGAAAAATTAAGATACAAGATGGGCCAGTTTCTAAAGAGACTTCATCTTCCAAAATGATTATGACAGCTAGCGCAGCTGGTGCTGCAGGGAAATTAGTTGGACCTGTAGTTTCTTCAGGTATGACCACAGTGCTGGAGCTTAGGAACCCTTCTACTGTTCATTCTAAGGCAAATTCCACAAGTGCCCCACAACCTTGTGCAGTTGTGCCTTCTGAAGCTTGGTTACAGAATGAGCGTGAGCTGAAACGGGAGAGGAGGAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAgGCGGAGACTGAAGAATTGGCACGGAAAGTTGAGATGTTAAACGCTGAGAATGTGTCACTGAAGTCAGAAATAACTCAATTGGCTGAAAGTTCTGAGCAGCTGAGGATGGAAAATTCTGCATTGAGGGAAAAACTCAGAAATACTCAACTGGGACAAACTGAAGAGATAATTTTGACCAGCATTGACAGCAAGAGGGCATTACGTGTAAGTACAGAAAACTTGCTATCAAGAGTTAATAATTCCAGTTCTAATGATAGAACTGcagagaatgagaatgatttCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTGGCAGCTGGTTGA 1272 0.4403 MGNSEEGKSIKTGSPSSPATTDQTNQPNIHVYTDWAAMQYYGPRVNIPPYFNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAFYPHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSVESPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAESVERGAENRLSQSVDTEGSSDGSDGNTAGANQTKRKRSREGTPTTDGEGKIKIQDGPVSKETSSSKMIMTASAAGAAGKLVGPVVSSGMTTVLELRNPSTVHSKANSTSAPQPCAVVPSEAWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLNAENVSLKSEITQLAESSEQLRMENSALREKLRNTQLGQTEEIILTSIDSKRALRVSTENLLSRVNNSSSNDRTAENENDFCENKPNSGAKLHQLLDTNPRADAVAAG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2893 423 MobiDBLite consensus disorder prediction 380 407 - -
Ssu4g2893 423 PANTHER G-BOX-BINDING FACTOR 3 1 423 - -
Ssu4g2893 423 SUPERFAMILY Leucine zipper domain 281 337 IPR046347 GO:0003700|GO:0006355
Ssu4g2893 423 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 285 300 IPR004827 GO:0003700|GO:0006355
Ssu4g2893 423 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 280 343 IPR004827 GO:0003700|GO:0006355
Ssu4g2893 423 MobiDBLite consensus disorder prediction 157 184 - -
Ssu4g2893 423 Coils Coil 298 346 - -
Ssu4g2893 423 Pfam bZIP transcription factor 278 340 IPR004827 GO:0003700|GO:0006355
Ssu4g2893 423 MobiDBLite consensus disorder prediction 155 216 - -
Ssu4g2893 423 MobiDBLite consensus disorder prediction 279 305 - -
Ssu4g2893 423 CDD bZIP_plant_GBF1 283 331 IPR045314 GO:0003700|GO:0006355
Ssu4g2893 423 SMART brlzneu 278 342 IPR004827 GO:0003700|GO:0006355
Ssu4g2893 423 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g2893 423 MobiDBLite consensus disorder prediction 107 129 - -
Ssu4g2893 423 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Ssu4g2893 423 Pfam Disordered region downstream of MFMR 129 257 - -
Ssu4g2893 423 Gene3D - 281 334 - -
Ssu4g2893 423 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 423 IPR044827 GO:0003700|GO:0006355|GO:0043565
Ssu4g2893 423 MobiDBLite consensus disorder prediction 99 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2893 Ssu-Chr4 73963500 73966769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2893 1 423 bZIP Transcription Factor Family AT2G46270 50.465 3.26e-113 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g2893 MFMR_assoc 8.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2893 K09060 - gmx:547789 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2893 4 73963500 73966769 Ssu4g2893 4 73963500 73966769 ECH
Ssu4g0167 4 2778351 2780344 Ssu4g2893 4 73963500 73966769 PCT