Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2888 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACCGCAAGCGCGGCAAGAACGAGGCGGACGACGAGAAGCGCGAGCTCGTGTTCAAGGAGGACGGCCAGGAGTACGCGCAGGTGCCTCCGCATGCTGGGGAACGGCCGCTGCGAGGCCATGTGCATCGACGGCACGAAGCGGCTGTGCCACATCCGCGGGAAGATGCACAAGAAGGTGTGGATCGCCGCCGGCGACATCATCCTCGTCGGCCTCCGCGACTACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGCCCGACGAGGCGCGGCTGCTCAAGGCCTACGGGGAGCTTCCCGATAG 336 0.6429 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVPPHAGERPLRGHVHRRHEAAVPHPREDAQEGVDRRRRHHPRRPPRLPGRQGRRHPQVHARRGAAAQGLRGASR 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2888 111 MobiDBLite consensus disorder prediction 73 97 - -
Ssu4g2888 111 MobiDBLite consensus disorder prediction 13 31 - -
Ssu4g2888 111 PANTHER EIF-1A 1 41 IPR001253 GO:0003743|GO:0006413
Ssu4g2888 111 MobiDBLite consensus disorder prediction 1 111 - -
Ssu4g2888 111 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 1 41 - -
Ssu4g2888 111 Gene3D - 2 60 IPR012340 -
Ssu4g2888 111 SUPERFAMILY Nucleic acid-binding proteins 2 45 IPR012340 -
Ssu4g2888 111 MobiDBLite consensus disorder prediction 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2888 Ssu-Chr4 73906871 73907206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2888 1 43 Eukaryotic Initiation Factors Gene Family AT5G35680 88.372 1.55e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2888 K03236 - jre:109019616 70.0922