Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2865 atGTCCTCCTTCAACCCTTTCTCTCCTCCACCACCCCCCACCCCTTACCTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGCgtcctcttcctcctctccaCCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACCGCCGCCGCGACCACCACTCCCCCGATGGCATCGTGCTCCCGCGCGTGATCTTCGTCGCCGAGGACGaagacgacgacgacgacgaccgCCACCAAAACGACGTCGTCTCCGGCCTCGACCAGGCCGTCATAAATTCCTACCCGAAGTTCCCGTACGTGAAAGACGGCGGTTACGACGGCACGTGCTCGATCTGCTTGTGCGAGTACAAGGAGTCGGAGATGCTGAGGATGATGCCCGAGTGTCGGCACTACTTTCACGTGTGCTGTCTCGACTCGTGGCTGAAGCTCAACGGGTCCTGCCCCGTTTGCCGGAACTCCCCCATGCCGACGCCGCTCTCGACGCCGCTGCAGGAGGTCGTGCCGCTCTCGCAGTACGCCGCGGATGCCAGGGGGAGGAGGTGA 567 0.5961 MSSFNPFSPPPPPTPYLTNLGFGYSIAIALGVLFLLSTLILSSYLCCRTLRHRNNRRRDHHSPDGIVLPRVIFVAEDEDDDDDDRHQNDVVSGLDQAVINSYPKFPYVKDGGYDGTCSICLCEYKESEMLRMMPECRHYFHVCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADARGRR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2865 188 SMART ring_2 117 158 IPR001841 -
Ssu4g2865 188 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Ssu4g2865 188 CDD RING-H2_PA-TM-RING 116 159 - -
Ssu4g2865 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 164 IPR013083 -
Ssu4g2865 188 Pfam Ring finger domain 116 159 IPR001841 -
Ssu4g2865 188 PANTHER RING-H2 FINGER PROTEIN ATL67 8 186 IPR044289 GO:0016567|GO:0016740
Ssu4g2865 188 SUPERFAMILY RING/U-box 98 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2865 Ssu-Chr4 73405763 73406329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2865 4 178 C3H Transcription Factor Family AT5G07040 37.778 6.07e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2865 - - vra:106773185 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0665 3 15937322 15937882 Ssu4g2865 4 73405763 73406329 PCT