Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2860 ATGGAAAGCCAAGACCCACCAAACCCTCCACCACAACACCCTCCTCCCTTCCTTTTCGCTCCCACGTCAACTATGCAAAACCCTTTGGAACCTCAAGGCTTGCATGACATAGACTGGGTTAACCTTTTCTCTGGCCAAAACAACTTCCTTGGGGGTGCCAAGGCGATGATGGAATgcgcttcttcttcttcttcatcttcatcgTCCTCATCGTGTGTTTTGATGGCTGAAAATGGGGTTCGCATGGATGAAAAGAGCgataaagagaaaaggaaaggggGCAGATTGATCAAGAAGACAACACGACCCAGGTTTGCGTTTCAGACTAGAAGTGCTGATGATATTCTGGATGATGGTTATCGTTGGAGGAAGTATGGGCAGAAAGCTGTGAAGAACAGCATACATCCCAGAAGCTACTACCGCTGCACGCATCATACATGCAATGTGAAGAAACAGGTGCAAAGGTTATCCAAAGACACAAGTATCGTGGTGACCACTTACGAGGGAATTCACAATCACCCATGCGAAAAGCTGATGGAAACCCTAACACCTCTTCTGCAGCAAATGCAGTTTCTCTCTAGGAATGTCACGCGCGACACGTATCATCACGTGTCGTGCCAGTGTTCAGTGTGTCGTTATAAAATGTCGCAGTTGCTGGATAAAGCCAAGAATTTTGTCTCGGAGAAGATAAATGACACGGCCAAACCTGAGGCGAGTGTCACCGATGTGGACTTCAAGCGCAGTAAAAAAAGGGATGATAAAGGCCAAGTGCACTCTGAAAATTCACCCAACAAGATGGAGCAGCTACCAGATGCAGGAACAGAAGTTGTACAGAACCCAGGACAGTTGCCAACCAAGGCATCACTATTAGGAAGTTATGCAAGATTGGCACCACAAGATGTTGAGGATTCACCCACTAATAGGAATCCAAATTAA 936 0.4412 MESQDPPNPPPQHPPPFLFAPTSTMQNPLEPQGLHDIDWVNLFSGQNNFLGGAKAMMECASSSSSSSSSSSCVLMAENGVRMDEKSDKEKRKGGRLIKKTTRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSIHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLQQMQFLSRNVTRDTYHHVSCQCSVCRYKMSQLLDKAKNFVSEKINDTAKPEASVTDVDFKRSKKRDDKGQVHSENSPNKMEQLPDAGTEVVQNPGQLPTKASLLGSYARLAPQDVEDSPTNRNPN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2860 311 MobiDBLite consensus disorder prediction 239 260 - -
Ssu4g2860 311 ProSiteProfiles WRKY domain profile. 111 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g2860 311 Gene3D WRKY domain 101 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g2860 311 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 191 IPR044810 GO:0003700
Ssu4g2860 311 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 30 191 - -
Ssu4g2860 311 SUPERFAMILY WRKY DNA-binding domain 109 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g2860 311 SMART WRKY_cls 116 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g2860 311 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g2860 311 Pfam WRKY DNA -binding domain 117 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g2860 311 MobiDBLite consensus disorder prediction 236 311 - -
Ssu4g2860 311 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2860 Ssu-Chr4 73349979 73364483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2860 85 193 WRKY Transcription Factor Family AT5G41570 72.072 3.50e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g2860 WRKY 9.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2860 - - gmx:100810669 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2860 4 73349979 73364483 Ssu4g2860 4 73349979 73364483 ECH
Ssu3g0672 3 16107786 16109295 Ssu4g2860 4 73349979 73364483 PCT