Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2858 ATGGAGTTTGCGTCCACTATAGTCGAACGAGTGATTAATTTTGTATGGGACCTGAGTGTTCGGCACGTGGCTTACGTCGTCCGTTACGGGCAAAACGTGGATGAACTAAACGGTAGTGTTAAGCATCTTGGACTTGAAAAAGAGAGGGTAGATCATCAACGTGATGAAGCTGAGAAAAATCTACACAACGTTGAAGGTACGGTTAATGAATGGTTTCTGAAAGTGAGTGAATTTGAGATCAAGGTTGAGGAGTTTGGGAACGATGAAGGCCACAGAAAGACAGGGTTGTCCAATGGTTTATTTGCTTACTTGAGGAATAGGCATAGACTAGGCAGACAAGCAAAGGAGATGGCAGAGGATGTTAAGAAGCTAATAGATGAGTCGTTCAAGTTTAATGAAGTTGCCTATCGGCAGAACGTAACATCTAATGATGCCACTTTGTCTAATGCTGACTATATAGAGTTTGGTTGTAGAAAATCCACAATGGAAGATATAATGGTACAACTTGAAGATTCCACTGTGAGAATGATTGGGCTGCATGGGCCAGGTGGTGTGGGTAAGAGCACTTTAATCAAAGCAATTGCTAAGAAAGCTCGAGACAAGAAGCTGTTTAATGTGGTGGTTGTAGTAGAAATAACAGCCAATCCCAATCCACAAAAAATCCAGGAAGAAATTGCTTACGTGTTAGGATTGAGATTGGAAGGGGAAGGTGAGAATGTGAGAGCTGATTGTCTACGGAGGAGGTTAAGGAAAGAGAAGGAGAACACCCTTGTAATCTTGGATGACCTTTGGGATAGATTAGACTTGAATAGGTTAGGGATCCCAGTTGATGATTACGATGATTCAAGCAATGATAGAAAGGATCTTAACAATAAAatggggaaaaaagaaaaatctcttGGGGATTACAAGGGGTGCAAAATTCTGCTAACTTCAAGGGATAAAAAAGTGTTGTCCGATAAAATGGTTGTTAAGTCAATTTTCTGTGTAAAGGAATTGGATGACAAGGATGCCCTGATGTTGTTTCAGAAGGTGGCTGCAATACCTGATGAAATGTCCAGCTCTAAACAAGAAATTGTTAAGAAGTACTGTGCAGGGATACCCATGGCAATAGTTACAGTTGGAAGGGCATTAAGAGACAACAGCGAGTCAGTGCTTTCAGTTGGAGATTTCAGGATGCCCGACAAGTACGAAGCATCCAGGTCATTGGCATTGCAGCTGAAGGATGGCGATGACAATATTCACTCCCAGAAAGGGATAAAATTGTTGTTTAAAAGagttgaaaatttattgttgGGAGAGCTAAATGCGGTTGAAATTGTTATTTATGAGTTGAATTTGGATGGATTTCCAGATCTGAAGCAGTTATCTATCACAAATAACAATCGCATCAAATATATCATCAACTCAATGGATTTGCCTCATCCTCAGCTTGTTTTTCCCAATTTGGAGTCTCTATGCCTCTACAAACTGATGAACATAGAGAAGATATGCGGCAGTCCAGTTAGAGATGCCTCATTCACCAAATTAAAAACCATCAAGGTCAAGATGTGTGCCAAATTGAAGCATCTTTTCTCTGTTTACATGGTTAAATTTCTTGCTTGTCTAGAAACAATTGATGTTTCTGAATGTAATTCTTTAAAGGAGATCATTGAAATACCAGAAAATTCTGATAAGGTTGAGTTTCTTAACTTACACTCTTTGACACTACAATCGTTACCATCATTTACCAGTTTTTATACCAGAGTAGAGGGGCCTGCTGTACCTCAACTGACAGAAGCACAAACAACAAACAGGGAACACGTAGAAATTACTATTGCAGAAGATGAGCGTAATGACATGGCCCCTCCTCTCTTTAGTGATCTGGTTGAAAGTCCAAACTTAGAGAGCTTGAATTtatcttcaatcaaaattgataAGATATGGAGCAACCAGTCCCCGACAAGCTTccgctttcaaaatttaataaaattagttgtgAAAGATTGTTATAAGTTGAGATATTTATGTTCATTGTCTGTGGCTAGCGGTTTGAGGAAGCTGAAAGGCCTCTTTGTGAGTGATTGTCAGATGATGGAGAAGATTTTTATCATTGAAGGGAACAATGCGGACAAGGTCTGCGTCTTTCCAATCCTGGAAGAAATCCACCTCAGCAAAATGAATATGTTAACAGACATATGGCAAACTGAATTGAGTGCGGATTCCTTTTCTAGTCTCATTTCGGTGCACATTGAAGAGTGTGATAAACTAGACAAGATTTTTCCAAGTCACATGGAAGGATGGTTTGCGAGTTTGGACAGCATGAAGGTTGTTAATTGCAAGTCAGTTGAAGTGATTTTTGAAATCGAAGATTCTCAGCAAATGGATGCATTTGGTGGGATAGACACAAATTTGCAGCATATTCTTGTAAACAACCTCCCAAGCTTGAAGCAAATGTGGAGCACAGATCCCGGAGGAATTCTTAACTTCAAAAAACTGCTGAGTATAGAGGTTTTTTCTTGTGATAAACTGAGGAATGTCTTTCCAGCTTCTGTGGCCAAAGATGTCGAAAAGCTCGAAGACATGATGGTAGTAACATGTGAGGGAATGGTAGAAATTGTTGCCTGGGATGATGGTTCAGAAACAAACAATAAACCATTGGTGTTTCCCGAACTAACCTGTATGACATTACTTACACTATCAAACATCAAGCATTTCTATAAGGGGAGGCATACTATAGAGTGTCCAAAATTGAAGACTCTGGGCGTTATAGGCTGTGGTGAGAAGCTGAAAACATTCAGAACAGAAATCAGTGAAAGCACAAATGAAGAACAACATGCAGTTTTCTCAGCTGAAAAGGTAATCCCCAACTTGGAGTACATGGCAGCGGAATTTGACCAAGCGCAGAAGTGGTTATGGAGCAACACTGTGAAGTACCCAATGCAAAGTTTAAAAATGCTTGTCTTGACTTCAGTTAACAATGGTGAACTTCTCTGTCAGTTTCTGTACAGAATGCCAAATCTAGAAAACTTAACATTGTTGAATTCTGACCATTTGCATAAAGAGTCGTCAGTGCCATGTTTGGGAACCGTATTAAAGCTGAAGGAATTggttttgttttcttcaaaaataaaggATCTAGGATTTGAACGAGACCCAGTTCTGCAGAGACTAGAGTTTTTGAGCTTAGAATTCTGCAACGATTTGATTAAATTAGCTTCTCCCTCGGTATCATTGACTCACTTGACATATTTGGAAGTAGAGTCTTGTAGTGGATTTAGGAATTTAATGGCATCCTCAACAGCCAAAAGCTTGGTTCAACTTAAGACCATGAAGGTTATCCAATGTgatgaaataaaggaaatagtAACCAACGAGGGAAATGAAGAAGGCAAAGTCATGGAAATTGTATTTAGCAAATTGATTACTGTAGAACTTGTGGCGCTAAAATACCTCACAAGTTTTTGCAATTACGAGAACTGTGATTTTAAATTCCCATCATTGGAAATATTGATTGTGAGAGAATGCCCCATGATGGAAACATTCACTAAGAGTCACACAAGAGAGCTAGCACCAAAGTTACAAAATATAGTTGCTgttgaaggagaagaggaagcaACGTGGCAGTGGGAAGGTGACTTGAATACCACCATACAAAAAGTTTTCAATGATAAGCTTTCGAATATGTCTGGAAAAGGAGGTTACTTTCACATACACGAAGAATCTGAATCTTTCGATTATCCTGAATTTGCAGAGCAACTATGGCATTCCAATCATTTGGTGCAACAAAACTACTTTCGCAATTTGAAAAGGTTAAGCGCATCCAGCTGTAATAGTCTAGTGCATGTAATTCCGTCACATTTATTTCCTTGCTTTGAGAATTTGGAAGAGTTAGAAGTACAGGATTGTATTGCAGCACAGGTCATATTTAATATCAATGAGACCAGGCTGACACAAGATTTGGGAATAATCCGTTTGAAAAAACTGTCTTTAACTGATCTACCGAAACTAGAGCATGTATGGGACAAGGATCCTGAGGGAATTATTGGCCTCCAAGTGCTACAGGATATGCATGTTGAAAGTTGTGGATGTCTAAAAAGTTTGTTTCCAGCATCGGTGGCTAAAGATCTTACCAGACTTCAAGAGCTTAAGGTAACAGACTGTAGGGAGTTGGTTGAAATATTTTCGAAGGATGAAAAGACTGCAGAAGGAGCAACAAAAATGTTTGTGTTTCATTGTCTGACTTCATTGACGCTAAAAGAATTGCCAGGGTTCAAATACTTCTATCCCGGATTACACACGCTAGAATGGCCTGTGCTAGAAAATCTACATGCATTTCATTGTGAGCTGGTGACACTCAAATGTCAAGAAGATCACCCAGAGGAGCAAGTCGTTATTCAAATTGAAAAGGTTATCCAAATGGACCAAATCCCCGGCTTGAAAAAACTGTCATTCGGTATCGGAGACACCCCGGTTACATGGGATCGAGAGTCTAGGCAATTGCGGTTTGATAAACTGCAACTCTTTCAAGAAGAGTCAGATAGTGCTCCTCTATACAGATTCCTCGACATGTTACCCAGTGCTATAGAAAAGCTTGAATTTGTACAGTGTTTGTTTGAAGAGATGTTTTCCGCTGAAAGACCAAATAGTGATTACACTAGAATCCTCTTGCACCTCAAGGAATTAGAGTTACTTGAGATGAATAATCTTAAGTCCATTGGTTTAGAGCACTCTTGGCTACAACCCTTCCCTCGATATCTCCAGACATTACAAGTAAAACATTGCAGTAGTTTGAAAAACTTGGTACCACGCACTGTATCTTTCTCGAATCTGACACATTTGGAAGTAAGTAACTGCGGAAGACTGCTATATTTGTTCACATCCTCAACAGCCAAAAGTTTGGCTCCActcaaaaggatgaagatagaAAGGTGTGCATCATTGCAAGAGATAGTATCCACAGAGGGGGATGAATCGCATGatgagaatgaaaaaataatatttgtgcAGCTCCAGGTTTTGTTTCTTGAAAGATTACATCAGTTAAGGTGCTTTTACCCTGGGAATTTTACTTTATGTTTTCCATCCTTGGAGCAAGTGTACGTAATCGACTGCAGCTTGATGAAAACTTTCAGTCCATTCAACAGAATAGATCATTCAACCAAGTGGTTTTCTGAAGAAGATGCGACATCCCAACAGTGCTGTGATCTTAATACTGCTGTCAGTACTGTGCGCAGGACGTTTGAGGAAAAGCCTACACCCAACTTACAGTGCCTGTCACTCGGTCAAATTGGACTGAAGAAGAGTTGGCCTGGAGAATTTCAGAGAAACCTTTTACACACGTTAAAAGTTCTTACTCTGTGCTCTCATATTGAGTCCGATGTATTTCCATATGAAATTCTTCAACAGGTGCCCAATATAGAGAAGCTTGGGGTGCTTTACAGTTCCTTCAAGGAGATTTTCTGCTGTCAAAGTCCTAATATGGATCATACTGGACTCCTATTACAGCTGAAAGTATTACACTTGGACTCCCTTGGAGATCTCGTTTCCATTGGGTTAGAGAACTCTTGGATTGAGCCCTTTCTCAGAAATCTAGAAATCATGCAAGTAATCAGTTgtcttaaattgaaaaacttggtACCATGCACAGTGTCTTTCTCCAATCTGACATTATTGGAAGTAAACCAATGCGATAGCCTGCTATACTTGTTCACATCTTCAACAGCCAAAAGTTTGGCTCAACTCAAAAGAATGGAGATAAAACGGTGTTCTTCAATTGAAGAGATAGTGTCTAAGGAGGGGGATGAATCACACAATGATGAGATAATTTTTGGGAAGCTCAATTGTTTGAATCTTGATGATTTACCAGAGCTCAGAAGGTTCTACAAAGGGAGTTTAAGTTTCCCATCCTTGGAGCAATTGTCAGTAACTGATTGCAACAGGATGGGAACTTTATGTCCAGGTACCGTAAAAGCAGACAAGTTGTTAGAAGTTATATTTCAGGGGGGCCCAGAGGCTATCCCACTGGAAACTGATCTCATGTCCACCATGCTGAACCGGAAGGCATTTCGGGCAACGCTTACACCCAACCTAGAGCACCTGACACTCGGTGAAACTGGACTAAAGATGATTTGGCGTGGAGAATTTCAGGGAAACCTCTTACACAAGTTAAAAGTTCTTAATTTACTGAACTTTCATGTTGAGTCCGATGTATTTGCATATGGATTTCTACAACTGGTGCCCAATATAGAGAAGATTGAGGTATCCTCTTGTTCCTTCAAGCAGATTTTCTGCTTTCAAAGTCTTAATGTGGATTATAATGGACTCCTATCACAGCtgaaagcattaagcatagactCCCTTGGAGATCTCGTTTCCATTGGGTTAGAGAACACTTTGATTGAGCCATTTCTCAGAAATCTAGAAACCTTGGAAGTAAgcagttgttctcatttaagaaACTTGGCACCATCCCCCTTATCTTTCCCCAATCTGATGTGTTTGTTTGTATTTGAGTGCCATCGATTGGAAAACTTGTTCACATCATCAACAGTCAAAAGCTTGGCTCGACTCAAGATAATGGAAATAAAAAGCTGTGAATCAATCAAAGAGATAGTGTCTAAGGAGGGGGATGAATCATATGAAGACGAAATAATATTTTGGCAGCTCCTTTATTTGAGTCTTGAATCTTTGCCAAACCTCATATGCTTCTACACAGGGAGTTTGAGTTTCCCATCCTTGGTGCAATTGTCAGTAATCAATTGCCACAGAATGGAAACTTTATCTTCAGGTACCATAAATGCAGACAAGTTGTTTGGAGTTAAGTTTCAGAAGAACTCAGAAGCTATCCCACTGGAAATTGATCTCAATTCTACCATTTGGAAGGCATTTCTGGCAACGgCTCCAGATGCTTTTAGTGCCTTTGACTATTTGAGTTCTTCAAGTTCAGATACTAATGAAGACAGGGAATATGGCTGA 6957 0.3855 MEFASTIVERVINFVWDLSVRHVAYVVRYGQNVDELNGSVKHLGLEKERVDHQRDEAEKNLHNVEGTVNEWFLKVSEFEIKVEEFGNDEGHRKTGLSNGLFAYLRNRHRLGRQAKEMAEDVKKLIDESFKFNEVAYRQNVTSNDATLSNADYIEFGCRKSTMEDIMVQLEDSTVRMIGLHGPGGVGKSTLIKAIAKKARDKKLFNVVVVVEITANPNPQKIQEEIAYVLGLRLEGEGENVRADCLRRRLRKEKENTLVILDDLWDRLDLNRLGIPVDDYDDSSNDRKDLNNKMGKKEKSLGDYKGCKILLTSRDKKVLSDKMVVKSIFCVKELDDKDALMLFQKVAAIPDEMSSSKQEIVKKYCAGIPMAIVTVGRALRDNSESVLSVGDFRMPDKYEASRSLALQLKDGDDNIHSQKGIKLLFKRVENLLLGELNAVEIVIYELNLDGFPDLKQLSITNNNRIKYIINSMDLPHPQLVFPNLESLCLYKLMNIEKICGSPVRDASFTKLKTIKVKMCAKLKHLFSVYMVKFLACLETIDVSECNSLKEIIEIPENSDKVEFLNLHSLTLQSLPSFTSFYTRVEGPAVPQLTEAQTTNREHVEITIAEDERNDMAPPLFSDLVESPNLESLNLSSIKIDKIWSNQSPTSFRFQNLIKLVVKDCYKLRYLCSLSVASGLRKLKGLFVSDCQMMEKIFIIEGNNADKVCVFPILEEIHLSKMNMLTDIWQTELSADSFSSLISVHIEECDKLDKIFPSHMEGWFASLDSMKVVNCKSVEVIFEIEDSQQMDAFGGIDTNLQHILVNNLPSLKQMWSTDPGGILNFKKLLSIEVFSCDKLRNVFPASVAKDVEKLEDMMVVTCEGMVEIVAWDDGSETNNKPLVFPELTCMTLLTLSNIKHFYKGRHTIECPKLKTLGVIGCGEKLKTFRTEISESTNEEQHAVFSAEKVIPNLEYMAAEFDQAQKWLWSNTVKYPMQSLKMLVLTSVNNGELLCQFLYRMPNLENLTLLNSDHLHKESSVPCLGTVLKLKELVLFSSKIKDLGFERDPVLQRLEFLSLEFCNDLIKLASPSVSLTHLTYLEVESCSGFRNLMASSTAKSLVQLKTMKVIQCDEIKEIVTNEGNEEGKVMEIVFSKLITVELVALKYLTSFCNYENCDFKFPSLEILIVRECPMMETFTKSHTRELAPKLQNIVAVEGEEEATWQWEGDLNTTIQKVFNDKLSNMSGKGGYFHIHEESESFDYPEFAEQLWHSNHLVQQNYFRNLKRLSASSCNSLVHVIPSHLFPCFENLEELEVQDCIAAQVIFNINETRLTQDLGIIRLKKLSLTDLPKLEHVWDKDPEGIIGLQVLQDMHVESCGCLKSLFPASVAKDLTRLQELKVTDCRELVEIFSKDEKTAEGATKMFVFHCLTSLTLKELPGFKYFYPGLHTLEWPVLENLHAFHCELVTLKCQEDHPEEQVVIQIEKVIQMDQIPGLKKLSFGIGDTPVTWDRESRQLRFDKLQLFQEESDSAPLYRFLDMLPSAIEKLEFVQCLFEEMFSAERPNSDYTRILLHLKELELLEMNNLKSIGLEHSWLQPFPRYLQTLQVKHCSSLKNLVPRTVSFSNLTHLEVSNCGRLLYLFTSSTAKSLAPLKRMKIERCASLQEIVSTEGDESHDENEKIIFVQLQVLFLERLHQLRCFYPGNFTLCFPSLEQVYVIDCSLMKTFSPFNRIDHSTKWFSEEDATSQQCCDLNTAVSTVRRTFEEKPTPNLQCLSLGQIGLKKSWPGEFQRNLLHTLKVLTLCSHIESDVFPYEILQQVPNIEKLGVLYSSFKEIFCCQSPNMDHTGLLLQLKVLHLDSLGDLVSIGLENSWIEPFLRNLEIMQVISCLKLKNLVPCTVSFSNLTLLEVNQCDSLLYLFTSSTAKSLAQLKRMEIKRCSSIEEIVSKEGDESHNDEIIFGKLNCLNLDDLPELRRFYKGSLSFPSLEQLSVTDCNRMGTLCPGTVKADKLLEVIFQGGPEAIPLETDLMSTMLNRKAFRATLTPNLEHLTLGETGLKMIWRGEFQGNLLHKLKVLNLLNFHVESDVFAYGFLQLVPNIEKIEVSSCSFKQIFCFQSLNVDYNGLLSQLKALSIDSLGDLVSIGLENTLIEPFLRNLETLEVSSCSHLRNLAPSPLSFPNLMCLFVFECHRLENLFTSSTVKSLARLKIMEIKSCESIKEIVSKEGDESYEDEIIFWQLLYLSLESLPNLICFYTGSLSFPSLVQLSVINCHRMETLSSGTINADKLFGVKFQKNSEAIPLEIDLNSTIWKAFLATAPDAFSAFDYLSSSSSDTNEDREYG 2318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2858 2318 SUPERFAMILY L domain-like 1747 1995 - -
Ssu4g2858 2318 CDD AAA 179 259 - -
Ssu4g2858 2318 Gene3D - 332 398 IPR042197 -
Ssu4g2858 2318 Gene3D - 135 326 IPR027417 -
Ssu4g2858 2318 PANTHER RPP4C4 1640 1724 - -
Ssu4g2858 2318 PANTHER RPP4C4 388 1557 - -
Ssu4g2858 2318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 382 IPR027417 -
Ssu4g2858 2318 PANTHER RPP4C4 2039 2275 - -
Ssu4g2858 2318 PANTHER RPP4C4 1 385 - -
Ssu4g2858 2318 PANTHER - 1640 1724 - -
Ssu4g2858 2318 PANTHER - 1 385 - -
Ssu4g2858 2318 PANTHER - 2039 2275 - -
Ssu4g2858 2318 SMART AAA_5 173 338 IPR003593 -
Ssu4g2858 2318 SUPERFAMILY L domain-like 1257 1705 - -
Ssu4g2858 2318 Gene3D Ribonuclease Inhibitor 1247 1479 IPR032675 -
Ssu4g2858 2318 Gene3D Ribonuclease Inhibitor 423 593 IPR032675 -
Ssu4g2858 2318 Gene3D Ribonuclease Inhibitor 1709 1992 IPR032675 -
Ssu4g2858 2318 Gene3D Ribonuclease Inhibitor 605 779 IPR032675 -
Ssu4g2858 2318 Gene3D Ribonuclease Inhibitor 1515 1708 IPR032675 -
Ssu4g2858 2318 Gene3D Ribonuclease Inhibitor 2018 2210 IPR032675 -
Ssu4g2858 2318 PANTHER - 1918 1999 - -
Ssu4g2858 2318 SUPERFAMILY RNI-like 970 1388 - -
Ssu4g2858 2318 Pfam NB-ARC domain 304 380 IPR002182 GO:0043531
Ssu4g2858 2318 Pfam NB-ARC domain 160 280 IPR002182 GO:0043531
Ssu4g2858 2318 Coils Coil 40 67 - -
Ssu4g2858 2318 PANTHER - 1836 1916 - -
Ssu4g2858 2318 PANTHER - 388 1557 - -
Ssu4g2858 2318 PANTHER - 1561 1637 - -
Ssu4g2858 2318 Coils Coil 107 127 - -
Ssu4g2858 2318 PANTHER RPP4C4 1918 1999 - -
Ssu4g2858 2318 PRINTS Disease resistance protein signature 364 378 - -
Ssu4g2858 2318 PRINTS Disease resistance protein signature 531 547 - -
Ssu4g2858 2318 PRINTS Disease resistance protein signature 176 191 - -
Ssu4g2858 2318 PRINTS Disease resistance protein signature 250 264 - -
Ssu4g2858 2318 SUPERFAMILY L domain-like 2022 2257 - -
Ssu4g2858 2318 Gene3D Ribonuclease Inhibitor 819 1190 IPR032675 -
Ssu4g2858 2318 PANTHER RPP4C4 1836 1916 - -
Ssu4g2858 2318 PANTHER RPP4C4 1561 1637 - -
Ssu4g2858 2318 SUPERFAMILY L domain-like 449 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2858 Ssu-Chr4 73185666 73233200 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2858 166 378 WRKY Transcription Factor Family AT5G45050 30.455 2.58e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2858 - - cam:101507264 1788.47