Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2846 ATGTCAATTAATTCTCAAACAGTGATCCACTCCCTCAtcgaattttttttatttttaaattctttattattttatagttctGAAGTACCCAGCAGCGAAATTCACATTTCACAGTCACGTGACCCGCACGCCGCCCTTGCAACTTtcctacttttcttttctttctctttcccgCCCTCACAAAAATTAACCCTCCGCCACCTTTCAAATTCCCCCTCACTTCCCCGCTATTTTTTCTcccggaaaaaaaaaaccagaaaaCAACACACGCACAGAGAGACACAACCGCTCGTTCAATTCAACGACCCACCGCAAGAGATGGTTGACGGCGTCGAGTTCGCCGGCACCATTTGTTCTATCTGCTACGAGCCTCTCAACCCCGTCAGTGAGGATCTTCAATCCGTCTCCATCTGCGGCCACGTCTTCCACGAGCTCTGTCTGCAGCAATGGTTCGAGTACTGTTCGAGAGGGAAGAAGCACACGTGTCCCGTTTGCAAGCAGAGTTGCAGGACCAGCGACGCGTGCAGGCTTTATTTTCAGTCAGTAGGAGACGCGAACGATGGCGCGAAAACTCAGAAGAGCGTTGAATTGGAGGAAGATGCTGGGGTTCTGCGCAGGGAGGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAGTTCTGAGTTGGAACGGCAAGGCAAGGAGTTGGAAGGACTTAACGAggagCTCTGTGCTTGCAAGGAGCAGGCTAAGATAGAAACAGCATTAAAGAATGAGGCTTTGAATCAAAAAGCATCCATACAATTCCAGCTTCATATGAAATCAGAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTAAAAGATAGGAATATGGCTTTAGCTAAAGAACTTGCAGCATTAAAATTAGTGTCAGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTCTGGGTAATGGAGCCAACAGTAAGGACACAATAGATACATTGAAAAGATCTCTGGTCATGCGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATATTCTGGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAGGCTAAAGAGAAAATTACTAAACTGAAGGCGAGGGTACAAGAACTGGAGACATTAGCTGAAGCAAAAGAGAACGAGTATCTGATGTCTCTGAAactttcaaagaaaacaaagagtTCAAAGAATGTTGAAAACAGCATCAATTCTGACTCTGATGCATTGACAGCTtgcaaattttcattaaaagagCAAAGCAAACAAATTTCAACACCCAAATCTGGAATGGACCTGACTGCAAACAACAACAGTGAATCTGTACAATCTTTGAAGATAGAGAACCCCAATGCTACTAAAAATAAGACTCTGAATATTAGTAATGGAAGTAAAACTACCTTGTCTCTTGATAATAAGAGAGATTATATCTCAATTGATGAAGATGATTCAGAAGGCACTAAAGCTTTGCAAGGTTGTTCAAAACACAACTACAAAGATCAAGACAGGGATGCTATTGCTTTTAGCAAGCCTTCTCTTGTGAAGCCAGAGGCCGTGTCTGGCATAAGGACTGAAACATTCTTGCAAGGAAAATGTACTTTGGCTGAGTCTCCCAGAGTTGATATTGACATTGACATGGTTAACATTTCAGCTGGTGCTATGGATGAAGATTTAACTTTAAAAGCCAACGTTAAACAACCGATGGTGAACATTAGAAAGGAGTCTCCATTAGCACTTTCAAATTCAGCTCCAGGGAACATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACAGAACAGTGAATCATCATCTGCAAAACGTTCGAGTAATGGGGATTTAATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCCTAGCCAAATCCTCTCGGGTGATAAGGAAAATTCAGTAAGTTCAAAAAGGTCAAAGTTTGGAGCTAAAACAAGTAGTTTGCAATCCCAGGGGTGCCTACAGATAGAACACTTTTTTGGGAAAGTCACTCAGTAA 2076 0.408 MSINSQTVIHSLIEFFLFLNSLLFYSSEVPSSEIHISQSRDPHAALATFLLFFSFSFPPSQKLTLRHLSNSPSLPRYFFSRKKKTRKQHTHRETQPLVQFNDPPQEMVDGVEFAGTICSICYEPLNPVSEDLQSVSICGHVFHELCLQQWFEYCSRGKKHTCPVCKQSCRTSDACRLYFQSVGDANDGAKTQKSVELEEDAGVLRREVKRLEVKVSGLSSELERQGKELEGLNEELCACKEQAKIETALKNEALNQKASIQFQLHMKSEELEKSTLECFRLKDRNMALAKELAALKLVSDLDIDEEEVLKLATLGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNILGRGEARYSKKLEKAKEKITKLKARVQELETLAEAKENEYLMSLKLSKKTKSSKNVENSINSDSDALTACKFSLKEQSKQISTPKSGMDLTANNNSESVQSLKIENPNATKNKTLNISNGSKTTLSLDNKRDYISIDEDDSEGTKALQGCSKHNYKDQDRDAIAFSKPSLVKPEAVSGIRTETFLQGKCTLAESPRVDIDIDMVNISAGAMDEDLTLKANVKQPMVNIRKESPLALSNSAPGNICFSGGLLGPDGTHRYLGKWCKRGQNSESSSAKRSSNGDLIAVGADGRGGRIKVLRTPSQILSGDKENSVSSKRSKFGAKTSSLQSQGCLQIEHFFGKVTQ 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2846 691 Coils Coil 194 235 - -
Ssu4g2846 691 SUPERFAMILY RING/U-box 117 171 - -
Ssu4g2846 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 198 IPR013083 -
Ssu4g2846 691 Pfam Ring finger domain 117 166 IPR001841 -
Ssu4g2846 691 SMART ring_2 118 165 IPR001841 -
Ssu4g2846 691 SMART ringv_2 117 166 IPR011016 GO:0008270
Ssu4g2846 691 PANTHER RING ZINC FINGER PROTEIN-RELATED 107 690 - -
Ssu4g2846 691 Coils Coil 352 386 - -
Ssu4g2846 691 CDD RING-H2 118 166 - -
Ssu4g2846 691 ProSiteProfiles Zinc finger RING-type profile. 118 166 IPR001841 -
Ssu4g2846 691 PANTHER RING ZINC FINGER PROTEIN-RELATED 107 690 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2846 544 691 C3H Transcription Factor Family AT4G01270 40.506 7.45e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2846 K11985 - gmx:100812811 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2846 4 72803736 72808771 Ssu4g2846 4 72803736 72808771 ECH